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rlorigro
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GFAse
Tool for globally phasing diploid assembly graphs with orthogonal data
Mozilla Public License 2.0
36
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Where to get detailed description of GFAse's computational methods？
#28
xujialupaoli
opened
1 month ago
3
Produce correct phased FASTA files when using the default chaining algorithm
#27
jeizenga
closed
4 months ago
0
Support Shasta Mode 3 naming
#26
kokyriakidis
closed
4 months ago
0
Stop double-deleting nodes in the unzip algorithm
#25
jeizenga
closed
7 months ago
0
Add CLI support for custom contact map input
#24
rlorigro
closed
7 months ago
0
terminate called after throwing an instance of 'std::out_of_range'
#23
csuzhang
closed
4 months ago
20
No rule to make target '../external/bdsg//lib/libbdsg.so'
#22
hoppo
opened
8 months ago
5
Add KMC3 documentation to README
#21
meredith705
closed
1 year ago
0
How to generate kmer .fa file
#20
scthree
closed
1 year ago
3
missing jansson package
#19
LHG-GG
closed
1 year ago
9
GFAse on Hifiasm assembly
#18
nirvana693
closed
1 year ago
2
Handle invalid CIGAR strings
#17
jeizenga
closed
1 year ago
0
Bug fix some logic in phased tails in Hamiltonian chainer
#16
jeizenga
closed
1 year ago
0
Incorporate basic overlap awareness in the unzipping process
#15
jeizenga
closed
1 year ago
0
Exception handling and additional CLI args
#14
rlorigro
closed
1 year ago
0
Segfault when running GFAse
#13
ivargr
closed
1 year ago
9
Update samtools build process and clean up CMakeLists
#12
rlorigro
closed
1 year ago
0
Error while building, cannot find config.guess and config.sub
#11
MartinSchmitz95
closed
1 year ago
6
No package "jansson" error during build step
#10
bistace
closed
1 year ago
3
add citation to readme
#9
meredith705
closed
1 year ago
0
Filter phased paths that are very likely to be haploid sequence
#8
jeizenga
closed
1 year ago
0
Debug the HamiltonianChainer and add better logging/debugging output
#7
jeizenga
closed
1 year ago
0
Improved chaining in graphs with complex local structure
#6
jeizenga
closed
1 year ago
0
Create LICENSE.md
#5
rlorigro
closed
1 year ago
0
Merge changes developed for fixing docker-only segfault and testing errors
#4
rlorigro
closed
2 years ago
0
Parent kmer csv
#3
meredith705
closed
2 years ago
0
Added parental kmer matrix and normalized by the parent kmer file size
#2
meredith705
closed
2 years ago
0
add kmer comparison as command line args
#1
meredith705
closed
2 years ago
1