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### Task Description
The ontology that we use for entries in the Chado stock table no longer exists.
For example, this would be the correct current URL for one of the terms but returns a 404 error
…
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```
---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
Cell In[20], line 2
1 with open("c…
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I run with `--useCommaByDefault`.
With [owl-cli-1.2.5.jar](https://github.com/atextor/owl-cli/releases/download/v1.2.5/owl-cli-1.2.5.jar) it respected it:
```ttl
sm:Ontology a owl:Ontology ;
d…
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### Title
Physiologically based pharmacokinetic modelling ontology
### Short Description
Ontology aligned for PBPK modelling in life science domain
### Description
The Physiologically-Based Pharm…
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Motivated by https://github.com/dhimmel/gene-ontology/issues/5
@NegarJanani to attempt to update this repo, you can:
1. install the conda environment
2. follow the readme execution command
Y…
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Dear Prof. Wang!
I try to update to ANNOVAR, but it gives error:
```
Error: invalid record found in avinputfile: A;CLNVC=single_nucleotide_variant;CLNVCSO=SO:0001483;GENEINFO=TNFRSF14:8764|TNFRS…
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In `packages/jbrowse-plugin-apollo/cypress/e2e/editFeature.cy.ts`, these three tests were disabled due to timeouts:
- "Can add gene ontology attribute"
- "Suggest only valid SO terms from dropdown"
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**Describe the bug**
If you type "phenological scales of olive tree" then press enter in the search box which is on the home page, the results do not include the ontologies that match this string.
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**Name:** MiTO, the Mention Typing Ontology
**Acronym:** mito
**Proponent(s):** [Matteo Guenci](https://github.com/matteo-guenci), ORCID (https://orcid.org/0009-0006-3139-1667)
MiTO, the Ment…
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[NFDI4Culture Ontology](https://ise-fizkarlsruhe.github.io/nfdicore/) (CTO) extends the NFDICore Ontology. It is also mapped to Basic Formal Ontology (BFO). As N4O uses CIDOC-CRM, both need to be mapp…