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Hello,
I had assembled my genome using Illumina and PacBio reads and then I wanted to gap fill using Oxford Nanopore.
I was trying to run the following:
gapless.sh -j 30 -i HybridSPAdes_PacBio…
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In [Benchmarking the Oxford Nanopore Technologies basecallers on AWS](https://aws.amazon.com/blogs/hpc/benchmarking-the-oxford-nanopore-technologies-basecallers-on-aws/), the authors mention the possi…
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Hi everybody, I have used MiniMap2 to map an assembled genome (generated with oxford nanopore reads) on a public reference, I did it to find the regions in common and not in commond between these two …
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Hi there,
I am trying to use your program, but the usage described in your paper is not very detailed.
Can you provide an example of configuratio file? What is cfg file?
Below is my config file f…
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I am a good 90% sure the processes we have to check the inverse and our data backwards for our longest common sub string. As we could have gotten the other half of DNA. I THINK it could have been read…
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/* --- PROJECT - VARIANT PREDICTION IN CYP2D6--- */
Investigate CYP2D6 Pharmacogenetic Variation:
- Involved in metabolism of nearly 25% of clinically prescribed medications
- Highly polymorphi…
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Hello,
I was able to install the megSAP pipeline and the NGSD database according to the instructions provided on GitHub and am now trying to run the trio_longread.php pipeline on our ONT data but cou…
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Hello! Thanks for putting together CliqueSNV - the ability to leverage long reads should be really powerful across different fields I think. I was curious if it would be possible to use long reads tha…
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**EDIT I guess it would help if I were to read the publication to see especially the figures on time and amplitude domains' effects on base identity.**
Hi, thank you very much for developing this t…
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Following [x.com/@fiamh](https://x.com/fiamh/status/1782261875876692322) I was made aware of the proposal for how to store modified base information in VCF files.
A quick search and I could not fin…
cjw85 updated
4 months ago