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Hi, thanks for your great work. I notice that in Figure 7, you used public mouse daatasets for analysis, and there exist cell types. However, in their raw datasets, they did not incldue the cell-type …
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`ONE OF` constraints aren't handled correctly by InterMineR and convert to invalid query XML.
```r
pancreasConstraint1 = setConstraints(
paths = c("Gene", "Gene.proteinAtlasExpression.level", …
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Hi team,
Are there any plans to create a mouse benign pancreas or malignant pancreas profile that can be used for any cosmx experiments run on pancreas cancer mouse models?
Best,
Alex
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### Task motivation
Spatial decomposition (also often referred to as Spatial deconvolution) is applicable to spatial transcriptomics data where the transcription profile of each capture location (spo…
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Participant downloaded matrix files for the pancreas dataset using the CLI, but found that the result was many matrices with 1 cell in each. This flow was not clear to the user
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Hi, thanks for the great package! I am trying to run trajectory inference with the PAGA wrapper and a seurat object as described in the vignette.
when I run with my object, I get the error:
> fina…
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**User story**
OMAPs are a set of features (antibodies) that target specific entities like cell types (which we represent as observation sets).
**Preferred solution**
First, complete https://…
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Hi all,
Thank you for developing what looks like an exciting tool!
I have a question:
When running the pancreas test data, I ran into problems relating to the absence of the ChEA & ENCODE datas…
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Hi,
I have a question about zscore in the GroupHeatmap.
Are the zscore compute for each gene, so i can compare the expression of one gene across all my group ? Or compute for each group so i compar…