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Participant downloaded matrix files for the pancreas dataset using the CLI, but found that the result was many matrices with 1 cell in each. This flow was not clear to the user
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Hi, if I want to reproduce the results in notebooks/data_analysis/pancreas.ipynb, which version of 'scArches' should I install?
Thank you in advance!
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Hello,
When I attempt the runMACS function I get back an unrecognized argument error message from snaptools in which I am told the file is not being found. Any idea where I might have gone wrong? T…
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Create datasets that can be used for consistent DeepSSM benchmarking.
Training data must include:
- Original and groomed images
- Original and groomed shapes (meshes or binary segmentations)
- …
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Hi Dear Authors,
Thank you for sharing your excellent work! We are leveraging it to facilitate our research, specifically focusing on training the diffusion model using the provided dataset (kidney…
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ValueError: Input 0 of layer dense is incompatible with the layer: expected axis -1 of input shape to have value 4096 but received input with shape [None, 1].
When I run the scIAE with the test data,…
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**User story**
OMAPs are a set of features (antibodies) that target specific entities like cell types (which we represent as observation sets).
**Preferred solution**
First, complete https://…
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It appears when I run the RunSlingshot() function using my own data:
1: No shared levels found between `names(values)` of the manual scale and the data's fill values.
2: No shared levels found betw…
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Hi, thanks for your great work. I notice that in Figure 7, you used public mouse daatasets for analysis, and there exist cell types. However, in their raw datasets, they did not incldue the cell-type …