zhanghao-njmu SCP issues

zhanghao-njmu / SCP

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

https://zhanghao-njmu.github.io/SCP/

GNU General Public License v3.0

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issues

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error in "RunKNNPredict" and "CellCorHeatmap"

#246 CCCBBG opened 1 week ago
0
How to customize the order of groups within the FeatureStatPlot function

#245 jphe opened 2 weeks ago
3
error in calculate trajectory

#244 rdf1993 opened 3 weeks ago
0
Negative P-Values RunDynamicFeatures()

#243 imev2023 opened 3 weeks ago
0
Problems with the RunSlingshot() function

#242 leo971001 opened 3 weeks ago
0
how to use Runharmony function in SCP ?

#241 fangzhoufan closed 1 month ago
0
Update violin plots inside GroupHeatmap

#240 EhsanRS opened 1 month ago
0
Spelling mistake in the GSEAPlot

#239 PietroD opened 1 month ago
0
DynamicHeatmap issue

#238 wangtanzhang612 opened 2 months ago
3
Slingshot Warning

#237 wangtanzhang612 closed 2 months ago
5
Issue on installation: object ‘LayerData<-’ is not exported by 'namespace:SeuratObject'

#236 xiaodiYan opened 2 months ago
9
The angle parameter doesn't work in the theme function

#235 Sophia409 opened 2 months ago
1
how to reduce run time for RunDynamicFeatures

#234 nbutyrate opened 2 months ago
0
Why is the number of DEGs output by FeatureHeatmap largely lower than that obtained from RunDEtest?

#233 Sophia409 opened 2 months ago
1
一点点小建议

#232 schnappi-wkl opened 3 months ago
0
Error in CellCorHeatmap()

#231 redtorrentCN opened 4 months ago
0
Upgrade to work with Seurat5?

#230 sebastiangornik opened 4 months ago
0
关于Seurat版本更新后的使用问题

#229 kikokhalifa opened 5 months ago
2
miniconda installation failed [exit code 2]

#228 Organacids closed 3 months ago
2
Question about several functions in SCP

#227 Cathearty opened 6 months ago
1
Obtain associated p values for CellCorHeatmap

#226 ChristinaSteyn opened 6 months ago
0
problem RunPAGA

#225 JoelHaas opened 6 months ago
1
Package conflicts with dependencies

#224 ayyildizd opened 6 months ago
1
Error in t.default(srt@assays[[assay]]@data[intersect(cell_annotation, : 参数不是矩阵

#223 schnappi-wkl closed 6 months ago
1
版本更新问题

#222 Portulaca666 opened 7 months ago
3
RunDEtest and FeatureHeatmap-enrichment take too long on my own dataset and can't run

#221 browningChen closed 6 months ago
2
Error: Cannot create zero-length unit vector ("unit" subsetting) (ht <- DynamicHeatmap)

#220 31474molly opened 7 months ago
0
Error: 'keyword_enrichment_from_GO' is not an exported object from 'namespace:simplifyEnrichment'

#219 Jzwing closed 7 months ago
1
library(SCP) Error: package or namespace load failed for ‘SCP’: object ‘LayerData<-’ is not exported by 'namespace:SeuratObject'

#218 Jzwing closed 7 months ago
2
There are two types of gene names and some gene names are missing when I use 'GroupHeatmap’

#216 wyr997-323 closed 6 months ago
1
Get errors when retrieving information from the BioMart database

#215 ZyRose1 opened 7 months ago
1
Error: Cannot find assay 'SCT' in this Seurat object ?

#214 xflicsu opened 7 months ago
0
error in RunCellQC

#213 yangtao38324 opened 7 months ago
1
GSEA error

#212 rdf1993 opened 7 months ago
2
Update reexports

#211 zhanghao-njmu closed 7 months ago
0
Update examples for CellDimPlot function

#210 zhanghao-njmu closed 7 months ago
0
Increment version number to 0.5.6

#209 zhanghao-njmu closed 7 months ago
0
Develop

#208 zhanghao-njmu closed 7 months ago
0
RunDynamicFeatures runtime

#207 france-hub opened 7 months ago
1
Error：SCP::RunCellQC(srt = pancreas_sub)

#206 Crorazon opened 7 months ago
2
RunKNNPredict bug

#205 zhangzhiguo-hub opened 7 months ago
0
Develop

#204 zhanghao-njmu closed 7 months ago
0
shiny@1.6.0 install issue in RunSCExplorer

#203 willey2020 opened 8 months ago
2
db "WikiPathway" Cannot Download Successful

#202 Minazukiz closed 7 months ago
2
Fix some bugs

#201 zhanghao-njmu closed 8 months ago
0
Fix some bugs

#200 zhanghao-njmu closed 8 months ago
0
Fix some bugs

#199 zhanghao-njmu closed 8 months ago
0
RunDEtest not running

#198 giorgiatosoni opened 8 months ago
1
install problem

#197 ywl506803062 opened 8 months ago
1
Update the url of TRRUST database

#196 zhanghao-njmu closed 8 months ago
0