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The data is stored in `duke/mri/nyu/2017-sheperd`.
The steps are the following:
- [x] A git-annex repo should be created :
- [x] The data should be Bidsfied
- [x] The data should be pushed to the…
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Is there a small example dataset on which I can test if my environment is set up correctly?
Also, I get `nonechucks may not work properly with this version of PyTorch (1.5.0). It has only been tested…
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Not sure the right term for this, but there was this concept for elements of Phenopackets to have (optionally) references to deeper data that could be useful for more fine grained analysis. There is "…
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https://doi.org/10.1038/s41591-018-0177-5
> Visual inspection of histopathology slides is one of the main methods used by pathologists to assess the stage, type and subtype of lung tumors. Adenocar…
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Due to an underlying bug in PIL (python-pillow/Pillow#1475), our present save implementation can't save very large images eg. (28800, 28800, 3) image. We may want to look into an alternate path way to…
colah updated
5 years ago
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**Is your feature request related to a problem? Please describe.**
We need to look at Next-generation file formats (NGFF) (https://ngff.openmicroscopy.org/latest/) which use [Zarr](https://zarr.rea…
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From the merge described at the bottom of this [issue](https://github.com/napari/napari/issues/1348), I learned that we can now specify the precise feature value to color mapping for point layers by p…
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Hello Dr. Mart and team,
I am using the pathology-hooknet-tls tool to identify TLSs and GCs in H&E-stained slides of diagnosed ccRCC samples. Despite following the installation and preprocessing in…
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![16412513776391885436184065757033](https://user-images.githubusercontent.com/30391897/147990116-e2444696-f0ab-4976-a296-b23d0e0f8675.jpg)
Installed sap crystal latest 64 bit version without any er…
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**Is your feature request related to a problem? Please describe.**
cuCIM is currently supporting only jpeg/deflate-compressed RGB image (which is prevalent on Digital Pathology image) only and does…