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Hi Sebastian,
I am trying to run the "prepare.community_similarity.R" script with a higher PARAM$thresh.otu_size
[ reached getOption("max.print") -- omitted 2329 entries ]
Calculate distances b…
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An important question about random generator support remains in scikit-bio. I am pinging @wasade because this question also impacts biom-format, and I would like also to seek @mortonjt and @mataton 's…
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Hi, I had to reinstall my R and Phyloseq and now I am getting this error when trying to implement adonis. I have been googling it without any success. Any help will be much appreciated. Thanks!
> d…
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Hi
I did PerMANOVA for beta diversity cal_diff() in microeco package.
Is that possible to apply it for Alpha diversity in trans_alpha$cal_diff() like other functions (Eg. KW, KW_dunn, anova etc) bec…
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Hi, I would like to save permanova and beta dispersion results in csv format. I have trouble saving especiallu beta dispersion results. Error in as.data.frame.default(tmp_beta$res_betadisper) :
c…
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Hello,
I am working in an experiment with several experimental blocks (different soil plots were we replicate the same treatments).
I therefore need to include the term “block” in the PERMANOVA mo…
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Study of gut microbiota alterations in Alzheimer's dementia patients from Kazakhstan -- Kaiyrlykyzy et al. --Scientific Reports
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9448737/
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Our preliminary analysis of haplotype effects indicate that there are differences in host and symbiont physiology by haplotype. These are more pronounced in Porites (but one haplotype only found at ⅔ …
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Household environment and animal fecal contamination are critical modifiers of the gut microbiome and resistome in young children from rural Nicaragua – Molly Mills – Microbiome
https://microbiomejou…
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Hi again Chi,
I have a question and maybe a suggestion.
- I've seen that for beta diversity is possible to do the following:
trans_beta$cal_manova(cal_manova_set = "Treatment + Week")
usin…