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e.g. the Chen model has specified noiseParameters in the measurement data, and no replicate measurement data is available. (so, standard deviation cant be calculated from replicates)
For plotting the…
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**Which problem would you like to address? Please describe.**
It would be great if one could specify units for measurements (and potentially parameters) in PEtab in a systematic way. This would be …
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[simulation_and_data__cell_cycle_no_M_washout_ridge__AU565__LEE011_Ribociclib__lambda10.0.pdf](https://github.com/PEtab-dev/PEtab/files/4237309/simulation_and_data__cell_cycle_no_M_washout_ridge__AU56…
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Would be great if PEtab would be usable with non-SBML models. Formats to consider would include e.g. cellML, bngl, pysb, .... Personally interested in pysb support.
Will be a significant implemen…
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Hi,
how does visualize.sampling_prediction_trajectories handle the plot titles when plots are grouped by condition?
My problem is that the plots are named condition_0, condition_1 ... but I do n…
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Documentation is inconsistent in using "observables table" and "observable table" https://petab.readthedocs.io/en/latest/documentation_data_format.html#observables-table
Code seems to be pretty co…
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**Which problem would you like to address? Please describe.**
Linting complains about invalid condition IDs. I believe the error is due to the fact that the condition id is numeric only. Ideally the …
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For reverse engineering and keeping track of which data points belong to which simulation conditions, it might make sense to replace the edatas array created in https://github.com/ICB-DCM/pyPESTO/blob…
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Hi, mistakes in units can lead to unexpected simulation results and some times hard to interpret results. Dimensional errors happen quite often. Would it be too hard to add dimensional analysis to pys…
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**Which problem would you like to address? Please describe.**
Lack of specification of the format for formulae (e.g. observable/noise formulae) in PEtab tables.
**Describe the solution you would l…