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I am having a problem running vg mpmap. It has stuck on the `[IndexRegistry]: Chunking VCF(s)` for days. Is there a solution for this problem?
```bash
[IndexRegistry]: Checking for phasing in VCF(…
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Hi,
I have a few questions related to the phasing options.
1. Why is the default SNP panel limited to these variants: "7.4M SNPs with minor allele frequency (MAF) > 0.05:"? If I have tumor data …
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Hi, I ran triophase on a number of families, a really nice tool to take in the trio information as it's not so clear with shapeit4. It left me wondering, though, is there a reason why the X-chromosome…
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Hello dear Canu developers,
I am assembling a plant genome for the first time and would like to ask for parameters recommendations. The genome is from a diploid plant with high heterozygosity and m…
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**Issue by [pyeres](https://github.com/pyeres)**
_Tuesday Mar 03, 2020 at 16:20 GMT_
_Originally opened as https://github.com/nyu-mll/jiant/issues/1026_
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Phasing out ELMo support has been float…
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Hi, @chhylp123
We are currently attempting to assemble a hexaploid using hifiasm with the following command:
```
hifiasm -t 100 -l3 --n-hap 6 --dual-scaf --ul ${ont} --h1 ${hic1} --h2 ${hic2} ${…
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In the context of somatic mutations there is no easy way to represent a genotype in the same way as in germline variants. For this reason, some somatic mutation callers, do not provide genotype inform…
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Hi,
My main question... Can `whatshap phase` be used on duos as well as trios?
I have been using the whatshap tool for trios successfully using `whatshap phase`, however, when I try to remove o…
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**[Original report](https://bitbucket.org/whatshap/whatshap/issue/82) by Shilpa Garg (Bitbucket: [gargsh](https://bitbucket.org/gargsh), ).**
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Implement the f…
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Actually, it's an idea of blocks that combine reappearing blocks from Twilight Forest and camo blocks, for fancier doors:
1. Phasing camo block - becomes transparent and passable when signaled through…