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### Branch
g4.58-Phenoshare-Values-Validator
### Groups
Group 4 - API | Services | Plugins
### Describe
Focuses on validating values in a data file submitted to Tripal Cultivate Phenoty…
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![Screenshot 2024-06-15 at 16 35 09](https://github.com/neurogenomics/rare_disease_celltyping/assets/34280215/ae1e51b6-9020-412b-97d3-5e3582f53d27)
Transcribed comments from @NathanSkene :
> "Mi…
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App worked perfectly. After latest AA auto needed to re-disable bluetooth autopairing.
AA does not execute any command, wait and try again later.
Phone Samsung Note 9, Android 10, latest AA AIO t…
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There are a variety of reasons for which grouping phenotypes is tricky, but right now it rally needs some serious love. We just have rows and rows of phenotypes with no indication of:
- [ ] which are…
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Is there a way to make the data files uncompressed?
### Examples
```shell
# Current
•/vep -i variants.txt -o variants_output.txt --gff 'data-gff.gz' --fasta 'genome.fa.gz'
# Requested
•/vep -i…
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https://github.com/bids-standard/bids-validator/blob/2d923f501bcf97b14e612833fb1bcb3af39f2b67/bids-validator/bids_validator/tsv/non_custom_columns.json#L68
In BIDS we have `phenotype/.tsv` but not …
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The new [Phenotype type](http://bio.sdo-bioschemas-227516.appspot.com/Phenotype) needs a descriptive definition.
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We'd like an algorithm that orders a list of phenotypes in a way that minimizes the sum of the sim distances between adjacent terms, with an option to co-sort two similar lists as well (retaining thei…
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check these annotations.
https://www.pombase.org/reference/PMID:32355220
https://www.pombase.org/reference/PMID:34292936
I'm not sure that the isochore formation is decreased compared to wt, i…
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Hi everyone,
I am working with two datasets, one European and one Asian, and have successfully calculated LD scores. I have a total of 21 phenotypes. For most phenotypes, the meta-analysis ran succ…