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Hi everyone~I'm doing PHESANT use my own dataset, but the result are shown as "no related required variable" . can some one tell me how to use my own variable to run the code(especially writing datac…
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Hello, I wanted to use this PheTK tool to conduct a PheWAS examining different variants in the ALDH2 gene. I tried to replace the information in the demo with the correct genotype I am looking for, bu…
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I don't know if this is just me and others on mac can do this successfully, or if no one is trying this on macOS and it's just broken, but while `conda build recipes/anise_basil` and the remote circle…
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Hi,
I made a pheweb site using structural variants. However, upon clicking a variant name, I receive a '404 not found' error and am unable to view the Phewas plot. I attempted to resolve this by addi…
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Master seems to be looking for the bed file in the wrong location
For r12 I am getting the error:
No such file or directory: '/mnt/nfs/pheweb/r12/release/cache/genes-b38-v39.bed'
Where as the avail…
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Hi everyone!
First of all, thanks so much for your work. It is helping immensely :)
I might have missed it, but I see no way of specifying the data type of the trait of interest in the same way …
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On this page:
https://github.com/dnanexus/UKB_RAP/tree/main/end_to_end_gwas_phewas/liftover_plink_beds_tmp
It says:
"In order to perform association testing with the sequncing data on step-2, it is…
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I first tried to install with `'pip3 install pheweb'` but got `'permission denied'` error.
So I installed with the code suggested in 'detailed install instructions'.
```
sudo apt-get update
sud…
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https://mp.weixin.qq.com/s/m4v3ZBRTLnJPuouA67kQ3Q
ixxmu updated
8 months ago
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https://mp.weixin.qq.com/s/gJsTv1WPfoncIzp6BixZlQ
ixxmu updated
7 months ago