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## Motivation
Pangenomes are key to understanding the distribution of gene content and synteny across closely related genomes. Currently, the driving force behind this strategy is sequence alignmen…
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[go-upper.obo](http://viewvc.geneontology.org/viewvc/GO-SVN/trunk/experimental/upper/go-upper.obo) which contains an ad-hoc grouping of ontology classes from multiple ontologies used for database chec…
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I've been running Roary in order to use the presence/absence tables as input for training ML models (to identify sub-species groups based on shared genomic features). As I don't really care if genes a…
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Hi, thank you for the beautiful work.
Porgen has been applied to generate proteins for CM and MDH families. In the Method section, the details are described as:
> We computed the AUC in receiver…
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The binding_17 rule extracts complex formation events for `A is associated with B` sentences. However, `is associated with` seems to be usually used to draw an observational, statistical link between …
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Kathy preferred the SGD menus
We will
i) look at PomBase and SGD menus side -by -side and compare contents to assess the difference and see where improvements can be made
ii) @manulera suggested …
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The following terms don't map to any gene, but should. Need to look into.
>more PRO_GPI.dat | grep taxon:10090 | grep -v protein_complex | perl ~dnatale/get_col_by_char.pl '\t' 2 3 8 9 | grep -v M…
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## Expected Behavior
I'm giving to MMSeqs2 360G of memory with 36 threads. I was expecting that it will use all this memory to increase the prefiltering speed.
## Current Behavior
During the pre…
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I'm not really sure where to begin on this. First step would be to check the AETIONOMY code on gitlab to see what @cebel was able to load before.
Possibilities:
- InterPro XML contains much more…
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Good morning, I finally managed to install everything and the tool run to the end. Unfortunately, I'm having some issues with the LTRstruct pipeline:
I run repeat Modeler on three different genomes a…