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SysBioChalmers
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CellFactory-ecYeastGEM
Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.
Creative Commons Attribution 4.0 International
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Chore/update results
#32
IVANDOMENZAIN
closed
1 year ago
0
Feat/call external ec factory
#31
IVANDOMENZAIN
closed
1 year ago
0
Repo reformulation to reduce the redundant files
#30
IVANDOMENZAIN
opened
3 years ago
0
Chore/restructure_repo
#29
IVANDOMENZAIN
closed
3 years ago
0
Calculate stoichiometric or network distance between chemical products using a global ecModel
#28
IVANDOMENZAIN
closed
3 years ago
0
Feat/cluster_analysis
#27
IVANDOMENZAIN
closed
3 years ago
0
chore/update_feat_branch
#26
IVANDOMENZAIN
closed
3 years ago
0
Dev
#25
IVANDOMENZAIN
closed
3 years ago
0
Feat/incorporate robust ec fseof
#24
IVANDOMENZAIN
closed
3 years ago
2
doc: update README
#23
IVANDOMENZAIN
closed
3 years ago
2
Feat/eval chassis strain
#22
IVANDOMENZAIN
closed
3 years ago
0
Fix/reduce chemicals list
#21
IVANDOMENZAIN
closed
3 years ago
0
Generate predictions for itaconic acid (Yli, Eco).
#20
IVANDOMENZAIN
opened
3 years ago
1
Find evidence in the literature about TDH1 high control coefficient
#19
IVANDOMENZAIN
opened
3 years ago
0
Pathway enrichment analysis
#18
IVANDOMENZAIN
opened
3 years ago
3
Strain design gem
#17
hongzhonglu
closed
3 years ago
0
Dev
#16
hongzhonglu
closed
3 years ago
0
Add product information in readme file
#15
hongzhonglu
closed
3 years ago
0
Put product list in readme
#14
hongzhonglu
closed
3 years ago
0
Strain design ec yeast
#13
IVANDOMENZAIN
opened
3 years ago
2
Generate 120 ecModels without strain background
#12
IVANDOMENZAIN
opened
3 years ago
0
Add 20 new products to the product list and generate the ecModels so that total products number is over 120.
#11
IVANDOMENZAIN
closed
3 years ago
0
Run the prediction using 2-3 typical products with rich experimental data using the previous methods and compared with the new prediction with ecFSEOF.
#10
IVANDOMENZAIN
opened
3 years ago
0
Meta-analaysis of all predicted targets for these 120 products.
#9
IVANDOMENZAIN
closed
3 years ago
0
Change protein synthesis reactions to charged t-RNA's instead of free amino acids
#8
IVANDOMENZAIN
closed
3 years ago
0
Create global ecModel (containing all heterologous components, no need to add additional strain background)
#7
IVANDOMENZAIN
closed
3 years ago
0
update_feat_branch
#6
IVANDOMENZAIN
closed
3 years ago
0
fix: update readme
#5
hongzhonglu
closed
3 years ago
0
feat/incorporate_results from robust_ecFseof for the production ecModels
#4
IVANDOMENZAIN
closed
3 years ago
3
incorporate_ecModels_changes
#3
IVANDOMENZAIN
closed
4 years ago
0
fix: fix the readme
#2
hongzhonglu
closed
5 years ago
0
Devel
#1
hongzhonglu
closed
5 years ago
0