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Dear Vadim,
I am struggling a bit with the cleaning of my data.
I do plasma proteomics on a TIMS-TOF and DIA-NN 1.8.1 found many low abundant proteins with an intensity under 1000. I even obtained…
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https://doi.org/10.1038/nature11503
>The genome-wide identification of pairs of interacting proteins is an important step in the elucidation of cell regulatory mechanisms1, 2. Much of our present kno…
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Hello @Shafayat115,
I hope this message finds you well. My name is kanami yagimoto, and I am writing to inquire about the LM-ARG repository on GitHub. I came across the following paper:
Ahmed, S…
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As part of our big refactor we are planning on using [`gufe`](https://github.com/OpenFreeEnergy/gufe) objects as base objects for most of the things we do. Writing a protein mutation protocol for [`al…
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Dear @jorainer
following up on the conversation in the slack channel, here comes the issue in the `Spectra` package.
The idea was to be able to calculate HUPO-PSI-defined quality metrics (http…
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I am trying to compare MaxQuant v 2.4 [mqpar..xml.txt](https://github.com/vdemichev/DiaNN/files/11358777/mqpar.xml.txt) with DIA-NN v 1.8.1
```
diann.exe --f "C:\Users\animeshs\230421_plasma\New\…
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Dear Authors. Could you clarify please.
Is there a stronger threshold for the identification of eukaryotic viruses? Because those contigs, which according to the program belong to eukaryotic viruses …
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Hi,
Thank you for developing FragPipe! I recently compared the search results from the DIA_SpecLib_Quant workflow in FragPipe with those from DIA-NN, using the same experimental data (2 instrumenta…
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A peptide spectral library is a curated, annotated database of LC-MS/MS peptide spectra. One essential utility of a peptide spectral library is to serve as consensus templates supporting the identific…
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A peptide spectral library is a curated, annotated database of LC-MS/MS peptide spectra. One essential utility of a peptide spectral library is to serve as consensus templates supporting the identific…