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**Goal**
Add part attributes to describe DNA concentration, volume, quantification, and tissue source
**Context**
We need to be able to document metrics of DNA extractions as part attributes. Ide…
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I generated the LIG.rtf file and LIg.prm files for ligand using charmm-gui (https://charmm-gui.org/?doc=input/ligandrm).
I encounter the following errors while System building for RNA-ligand.
``…
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Definition of ECO:0000085 is confusing.
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### My Question is...
Hi all,
I know that the energies achieved via mmpbsa calculations from different tools are not necessarily comparable between different tools. However, I was very suprised …
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Hi
Following the recognition that miRs need to have a MF term to describe their activity the GO term GO:1903231 mRNA binding involved in posttranscriptional gene silencing has been changed to: GO:…
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There are some horrible terms under 'translation regulator
activity', and I don't believe any of them are true functions.
Many are defined to sound like proteins and are defined by
being involved i…
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Hi,
According to Data curation, I need to format the peptide-protein data like "`protein sequence, peptide sequence, protein_ss, peptide_ss`", but in fact preprocess_features.py needs me to provide t…
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### My Question is...
How can I avoid calculating ΔEDISPER term when performing a CHARMMFF pbsa calculation? I found a solution: https://groups.google.com/g/gmx_mmpbsa/c/pYeE20pbhnc?pli=1
however,…
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Manuscript is accepted in principle, we just need to make these updates!
Reviewer 1:
- [x] 1.1 #1185
- [x] 1.2 #1185
- [x] 1.3 #1187
- [x] 1.4 #1185
- [x] 1.5 #1185
- [x] 1.6 #1191
Rev…
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Hi
I am not sure if this should be an ontology request or an annotation request. It depends what the decision on the discussion below is.
I think we need to have function terms for ncRNAs. The o…