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- Describe the issue or question:
I recently updated the whole FragPipe workflow ( all tools updated for V21.0, 8jan 2024).
Standaard DDA search runs repeatedly into error message after PeptideProp…
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I used MSConverter to convert Agilent .d file to .mzXML file. Then use Fragpipe for database searching.
The Run was stopped. Please help!
System OS: Windows 10, Architecture: AMD64
Java Info:…
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### Description of the bug
Output mzTab has mismatches between the peptide and protein sections of the data. For example, protein intensities listed for study-variable/protein combinations that have …
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I'm the team coordinator of PRIDE team ([www.ebi.ac.uk/pride/](http://www.ebi.ac.uk/pride/)), the
largest proteomics database, part of ProteomeXchange. We have multiple users asking us to submit Olin…
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貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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Hi,
I"m trying to re-create this workflow using snakemake and OpenMS version 2.9.1:
https://hub.knime.com/openms-team/spaces/Blog%20workflows/latest/Protein%20label-free%20quantification~Q8TgAl_OA…
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_This checklist was developed by Alina Renz during her PhD thesis._
- [x] 1. **Decide for an organism of interest.** Denote name and strain.
- [x] Check whether the strain is available on the …
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Fragpipe sometimes works, sometimes stops with "panic" and "this is a bug" statements. Also, apologies, but Chrome would not allow zip file upload, nor copy/paste of zip file. Original text of the end…
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Hi Phillip,
I wonder if IRS normalisation is still valid on data with NAs (without imputation)?
In that case, to get the geometric average intensity for each protein, the below modifications will…
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Hi There
I Got the search result but the PDV can't display the spectrum.
Invalid spectrum file path. Please check it.