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Details to be updated. Part of the initial requirements are a bit of a survey about what can be ingested beyond the open access articles they have available.
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Extract PublicationTypeList from the XML documents and create an array.
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Hi Nathan
I tried to use your IVT modelling tool from https://pubmed.ncbi.nlm.nih.gov/38695152/, unfortunately none of the jupyter notebooks work in the state as they are in this repository.
The e…
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Used for:
https://pubmed.ncbi.nlm.nih.gov/36745799/
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For our sources, we store PMIDs as Documents. Some sources provide more information than others. For example, OncoKB only gives the PMID. Whereas CIViC gives authors + description. An example would be…
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@spektom @jbednar Hi thanks for this wonderful tool , just wanted to knw how to visualize the standard datasets like cora/pubmed/citeseer/graph classification dataset using pyvis
Thanks in advance
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We should aim to read open-access papers that are available from other sources beyond PubMed. I suspect most of these will be in PDF format, so @GullyAPCBurns's software becomes very handy.
Ideas …
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Where is the instructions to make these datasets?
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I am using `grobid` through `langchain` and have observed a weird behavior
I hope you have priviliage to access the following papers `pubmed.ncbi.nlm.nih.gov/8440333` `pubmed.ncbi.nlm.nih.gov/186288…