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The final output of dipcall includes two files: prefix.dip.vcf.gz and prefix.dip.bed. A raw variant call is made in the VCF if a non-reference allele is observed in any alignments >=50kb and mapped wi…
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Hi,
I know that Hifiasm is designed for Pacbio HiFi reads but I am doing an experiment in which I am trying to assemble Illumina-corrected ONT reads with Hifiasm v0.15. The reads were de novo corre…
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I am using quite long illumina-quality like reads for a plant genome as the short reads input. However the correction on whole genome scale does not work accurate enough to really make a difference. M…
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Hi,
I am runng Ratatosk with
`Ratatosk -v -c 16 -s another.fastq.gz -l ../Nanopore/all_reads.fq -o all_reads_Ratatosk`
my `another.fastq.gz` is a sample of the first 1000 reads but the problem is t…
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Hi,
Thanks for the nice tool. I currently correcting ONT and Pacbio raw reads using illumina short reads and HiFi reads. Do you know whether I can use the corrected reads as input for hifi assemble…
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Hi,
When I use the Ratatosk ,it may have terminated prematurely because out of RAM. The output is Ratatosk_sr.fasta and Ratatosk2.fasta. Is there any way to resume from the last completed stage?
lyn…
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Hi,
I have four long read files. I am running Ratatosk (not reference-guided mode) on these four files but it has taken too long to finish running. I am wondering if I run Ratatosk for the four lon…
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```fsharp
let x = 123 in ()
```
is being formatted to
```fsharp
let x = 123()
```
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Hi,
when compiling on Ubuntu 20.04, I'm not sure if pthreads were found or not ? At least, the test failed, but threads were found? Correct ? Is this to be expected ?
Thanks.
```
Release mo…
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Hi Mikhail,
I am trying out flye for the first time on some corrected Pacbio reads. The configure and assembly stages went fine, but then I get an error at the start of the repeat stage.
```
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