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#### Changing the "composition" of the training set
Things to try (using the MetaSRA annotations):
- [x] Cancer data only
- [x] Tissue only
- [x] Cell lines only
- [x] Blood only
- [x] Everyth…
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+ /usr/bin/make -O -j48 V=1 VERBOSE=1 check
/usr/bin/make check-TESTS
make[2]: Entering directory '/home/tkloczko/rpmbuild/BUILD/patchutils-0.3.4'
PASS: tests/broken1/run-test
make[2]: …
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https://github.com/AlexsLemonade/refinebio/issues/508#issuecomment-411842251
### Problem or idea
Thus far I've taken two approaches to masking values for these experiments: 1) missing completely…
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I'm going through it now but found a broken link to recount2:
The link as exists in the markdown is : https://http//doi.org/10.1038/nbt.3838, but should be just https://doi.org/10.1038/nbt.3838
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`scmap` [code](https://github.com/hemberg-lab/scmap) and [paper](https://www.nature.com/articles/nmeth.4644) and the related `scfind` [code](https://github.com/hemberg-lab/scfind)
`SingleR` [code](h…
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Hello!
First of all thank you so much for sharing this app with the community!! It is very easy to use and really really powerful
During the analysis of SKCM, a error is reported as I show you bel…
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Thanks for a great resource. When I download tsv files from the recount2 website (for instance, the GTEx data http://duffel.rail.bio/recount/SRP012682/counts_gene.tsv.gz), I have no way of linking thi…
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Hi there,
I encountered an error with prep_sample.R, after the counts_exon_*.tsv is created. The error is for “SummarizedExperiment” object which says the number of rows in assay must equal number …
udp3f updated
6 years ago
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Hi!
I'm using ReCount2 and it's very helpful and easy to use, I really appreciate all the effort.
I was working with counts from SRP041538 and I realized that the file only contains 187 (of 189) …