AlexsLemonade compendium-processing issues

AlexsLemonade / compendium-processing

A series of analyses related to refine.bio species compendia

BSD 3-Clause "New" or "Revised" License

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Update zebrafish compendium README.md

#28 jaclyn-taroni closed 5 years ago
0
Add context and table of contents to top directory README

#27 jaclyn-taroni closed 5 years ago
0
Add brief summary of main findings in `quality_check` README

#26 jaclyn-taroni closed 5 years ago
0
Dockerfiles for quality_check

#25 jaclyn-taroni closed 5 years ago
2
Move imputation method evaluation to own directory and add README

#24 jaclyn-taroni closed 5 years ago
0
[QC PART 9] What samples comprise the two groups of RNA-seq samples?

#23 jaclyn-taroni closed 5 years ago
0
[QC PART 8] Add compendium PLIER evaluation

#22 jaclyn-taroni closed 5 years ago
2
[QC PART 7] Add notebook for preparing zebrafish prior info for PLIER

#21 jaclyn-taroni closed 5 years ago
0
[QC PART 6] Do short genes tend to be zero for RNA-seq?

#20 jaclyn-taroni closed 5 years ago
1
[QC PART 5] Identifying genes that are "differentially expressed" between technologies

#19 jaclyn-taroni closed 5 years ago
1
[QC PART 4] Add notebook exploring lowly expressed genes

#18 jaclyn-taroni closed 5 years ago
0
[QC PART 3] Add PCA notebook + output

#17 jaclyn-taroni closed 5 years ago
0
[quality_check] QC specific README

#16 jaclyn-taroni closed 5 years ago
0
[quality_check] QC specific Dockerfile(s)

#15 jaclyn-taroni closed 5 years ago
3
[QC PART 2] Add notebook for comparing gene-level estimates

#14 jaclyn-taroni closed 5 years ago
0
[QC PART 1] Set up and quantification with older genome build

#13 jaclyn-taroni closed 5 years ago
1
[imputation_method_eval] Move the analyses in top directory to their own folder and summarize results in README

#12 jaclyn-taroni closed 5 years ago
2
Getting info on the run time for KNN impute

#11 jaclyn-taroni closed 5 years ago
2
Construct "masked" zebrafish matrix for use as gold standard for imputation challenge

#10 jaclyn-taroni opened 5 years ago
2
Calculate error

#9 jaclyn-taroni closed 6 years ago
1
Process and impute

#8 jaclyn-taroni closed 6 years ago
0
[human_missingness] Make human_missingness scripts generalized to all species

#7 cansavvy opened 6 years ago
0
cansav09/missingness

#6 cansavvy closed 6 years ago
8
Aggregate and mask data

#5 jaclyn-taroni closed 6 years ago
1
Is this a shadow issue?

#4 dvenprasad closed 6 years ago
0
Methods to try for imputation

#3 jaclyn-taroni closed 6 years ago
0
Selecting SCAN-processed and lengthScaledTPM data for download

#2 jaclyn-taroni closed 6 years ago
1
What does missingness look like for the human compendium?

#1 jaclyn-taroni closed 6 years ago
1