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### Description of feature
### Description of feature
This issue is recreated from @JackCurragh's module plan (the issues wouldn't transfer over).
Here is attempt to break down the required/desir…
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Hi,
I am using the below command to generate a metaplot for CDS regions-
PlotMetageneAnalysis -i output_prefix/Riboseq_all_CDS_normed_dataframe.txt -o output_prefix/Riboseq_all_CDS_normed -g Ctrl,T…
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Hi, was trying to use ORFik for my riboseq analyses, i encounter this error when running ORFikQC.
Using R 4.2.2, ORFik 1.18.2, window10
```
riboExp Saving, ofst files to: transcript.bam/ofs…
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hello again,
thanks for your help in `ORFik`, I met another problem in the final step of ...uORF analysis... .
When I run :
```
find_uORFome("/home/bio/biosoft/riboseq_data/projects/Al…
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Hello,
My ORFquant installation keeps getting stuck on a singular dataset at the "Exporting ORFquant results" step. I've let it run for longer than a week and am now sure it is not simply in need o…
jdcla updated
7 months ago
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Good day.
Thank you for this tool.
I have a few questions.
Can you please clarify the input/output requirements for RIBO-former a little better?
For example, I'm not sure if the fasta files s…
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Problem
I am currently working on calculating the ribosome release score for a set of ORFs (Open Reading Frames) using Riboseq reads. To make the runtime more efficient, I have been filtering the BAM…
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When I try to conduct the QC on my experiments the BAM files output fine, get converted to ofst files, and have read length tables created for them, though an error keeps popping up after this step:
…
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### Description of the bug
I am using the rnaseq pipeline to analyze some samples of single-cells. While I successively completed the analysis for 2 other experiments, it seems like a particular cell…
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Hi,
Thanks for your tool
Before running riboformer on all my data i tried reproducing the result you gave in the article as a way to help me identify a treshold to use as orf/protein evidence fr…