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Find a way to programmatically or hand-sampled check the results against the "RNA backbone" summary numbers and the list of outliers in the text report obtained by clicking on the summary image.
If…
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I can use the image to create the relative directories and download the example database but I can not download the query db.
$ docker run --rm ncbi/blast efetch -db protein -format fasta \
-id …
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This will make RNAcentral search consistent with Kayak, Amazon and others.
Burkov:
Time estimate is: ??? (ballpark of 10-20 days)
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I'm trying to generate a model using a map generated in cryosparc and protein fasta file. The process runs through the Initial C-alpha prediction phase and then terminates, leaving behind an empty out…
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Date: Monday 9th Oct 2023
Time: 5pm BST ([other times](https://www.timeanddate.com/worldclock/meetingdetails.html?year=2023&month=10&day=9&hour=16&min=0&sec=0&p1=43&p2=136&p3=37&p4=771&p5=235&p6=152&…
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Hi! Is the PISA API working?
I currently have a series of unp_ids, such as ['Q5VTD9', 'Q6PL24', 'Q9UKM9', 'Q9H0A3', 'Q9P2N6', 'P21127', 'Q8TD94', 'Q86SH2', 'Q9BYR3', 'Q99856']. How can I retrieve fo…
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This section includes a living Google doc form of the review on helicases as therapeutic targets, which can be viewed and edited through the following link.
https://docs.google.com/document/d/14GnyDP…
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We should try to integrate these loaders so that we can eventually use tools like OpenFF or Espaloma to parameterize the receptor/biomolecule as well as the ligand.
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Great library! I noticed when I read in a PDB file with N-terminal hydrogens (H1, H2 and H3) that H1 and H3 are not listed as bonded to the N atom. These atoms are common in NMR models and structures …