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I think that there is an issue with the directory path! I m getting the following error with make: "/home/user/Downloads/gtfold/gtfold-mfe/include/AdvancedDouble.h:25:10: fatal error: gmp.h: No such f…
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Hi all,
This is such an awesome review, and i'd love to use it as a basis for teaching, but i've had to jump back-and-forth through sections, as the current structure doesn't flow as naturally for a …
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## Background
`GenBank` format ("GenBank Flat File Format") is a genomic format that describes nucleotide sequences and their protein translations. `GenBank` file (`.genbank`, `.gb`, `.gbk`) is a s…
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Hi, what do I need to do to adapt this pipeline to run on a linux box bypassing SGE (I have no access to a server running such a facility); would that lead to restriction for the number of RNA sequenc…
brobr updated
5 years ago
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We are working on annotation documentation for MF-to-BP relations and would like to assess the extent to which relations, other than 'part of', have been used to link MFs to BPs in Noctua.
We would…
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Hi, first of all, thank you very much for publishing this code!
I have a question about the fine tuned secondary structure prediction.
The predict_ss_rna.py script demonstrates how to use the fine t…
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We need to collect a few current and anticipated needs of representing stages directly as part of our phenotype definitions, for example, phenotypes where prenatal time stages are affected. It would b…
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**Background**
It is hard to overestimate the importance of hydrogen bonds in macromolecules. They are crucial for the stability and function of macromolecules, and their existence allows the life to…
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we should do this fairly soon to avoid ongoing confusion.
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I really love this tool and the output it gives, even for users like me.
From the RBP researcher point of view I have small suggestions:
- A normalization of overlaps like it is done in homer ( …