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Hi,
Thank you for the great software!
I wonder if the consistency of cell type proportion can be used to evaluate the success of cell type deconvolution in my study. I observe the following re…
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Hi,
I am confused about the result and use of zUMIs pipeline.
Here are my yaml content.
[pm1-1.yaml.txt](https://github.com/sdparekh/zUMIs/files/13542275/pm1-1.yaml.txt)
**Firts,** my input was th…
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Hello,
When running runDWLSDeconv, I get the following error
```
Error in enrich_matrix[, ct_spot_k[m]] : subscript out of bounds
In addition: Warning messages:
1: In sparseMatrix(i = indices[…
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Installed scTE in a Conda environment but kept getting problems until I upgraded to python 3.9
When python=3.6, I couldn't install a recent enough version of scipy (required scipy >= 1.8, but 1.8 dep…
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Hi,
Sorry to bother you again.
I'm having difficulties interpreting the provided differential expression values.
I took values from the ASD_DEGcombined.csv file, which seem to be coherent wit…
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I try the "Using polyApipe" pipeline and get a error in "Further processing in R" as following:
################ code ################
polyApiper:::do_ensembl_organism(
out_path="human_ens100",…
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I have an FAQ on using the single cell instance (and, tbh, tutorial mode) I'd like to appear at the beginning of ALL single cell tutorials
Ditto an FAQ on joining the single cell user community to …
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Hi,
I'm currently testing your method on my scRNA-Seq datasets with Seurat, I'm using the 2 scripts you included in the examples directory, I just have one issue (see the name of this thread) when r…
Lux91 updated
3 years ago
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Hi,
I'm just trying to replicate this analysis using the library data on GEO, and am missing the E_selections.fa file. Is this a list of all barcodes for index E? If so, would it be possible to pro…
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This has been absorbed back into https://github.com/sanger/limber/issues/1314, as I think it makes most sense to implement them both at the same time.
**User story**
As a user of the scRNA Core Ba…