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Getting `TypeError: object of type 'generator' has no len()` when calling `tokenization_scorer.score("Hello there", metric="seq_len")`. Same for different inputs (list of lists etc.). Found a workarou…
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https://www.astro.umontreal.ca/~cook/apero-drs/auto/recipe_sequences/spirou/sequence_science_seq.html
says :
Run all nightly science target steps.
This should be run after preprocessing of (at le…
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``` python
if kv_seq_len > local_branch + global_branch and use_lambda_mask:
past_key_value = (
torch.cat([
key_states[..., :global_branch, :],
…
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### Motivation.
In the current design, user cannot set VLLM_DECODE_BLOCK_BUCKET_MIN/MAX/STEP properly for small batch size and large batch size at the same time.
For example, considering requests…
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### Related problem
From [Discord today](https://discord.com/channels/601130461678272522/1282666419590533161), currently `seq date` can only use `--date `, which isn't very "Nu'ish".
### Describe th…
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XDY+C29466T(N:A398V)+G25166C(S:E1202Q)
GISAID query: C29466T,G25166C,G19669A
No. of seqs: 15(USA 14(NJ,ND,CT,IA,RI,TX,MN,AZ,NY,NE) Canada 1)
First: EPI_ISL_19285227, USA-NY, 2024-7-8
Latest: E…
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**Describe the bug**
I can successfully annotate the test genome, and I can run the annotation process on my own sequence, as long as I run it from the command line in the 'for-my-own-use' way, so er…
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### 🚀 The feature, motivation and pitch
Supporting these architectures would enable benchmarking popular models such as T5 and BART. Most of the benchmarking suite should be identical to the decoder …
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It seems that there is, and will be a lot of spike diversity in XEC. Better gather them in one issue.
Only count for branches with more than 2 places.
GPT Model trained on August data(seqs before…
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Hello,
I have another question concerning this pipeline.
The m6A accessibility and level are calculated using in vitro samples : do you think it is possible to estimate the m6A accessibility in a…