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This would be nice because then you could simply do `curl -d file.fasta`, and it could also be used in other projects, allowing them to index Fastas without using our app. Does this seem like a good …
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When we tag a heterozygous pair on variant search page the first time (create_saved_variant_handler method called), the following piece of code does not correctly fill up 'variantGuids' parameter in e…
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**Describe the bug**
I was able to use project variant search last week, however, when I tried to use today, it only showed me a white screen.
**Link to page(s) where bug is occurring**
https://…
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I have the most previous experience with SnpEff/ClinEff. Do people here have preferences as to which tool if any to run and any non-standard parameters to use?
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**Is your feature request related to a problem? Please describe.**
The gnomAD co-occurrence link is showing in seqr if the variants are present in v4 but Variant Co-Occurrence data is only calculated …
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This is a high-level proposal for generalizing the AnVIL workspace import feature to allow:
1. Support for importing data from other sources such as a GCP project (and potentially Azure in the futu…
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**Describe the bug**
One of our researchers tried to create a very large gene list and resulted an error in the UI (see attached screenshot).
Raising this for reference only so feel free closing i…
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Note to self:
5e6ab1bbecd816003a0a18578da6c579e14945b6
These lines might belong below the else block:
SystemInfoHandler sih = new SystemInfoHandler(container);
versionSolr = sih.getVersion();
They mi…
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**Description**
Using the documented `docker-compose exec seqr python manage.py createsuperuser` command, two users can be created that share the same email address. Two users cannot be created that …
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**Describe the bug**
iGV js is struggling to display PacBio CRAMs loaded into a project. The CRAM is accessible by Seqr and the data loads, it is just not being displayed by the iGV viewer. Viewing t…