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**Reported by cmungall on 2008-01-29 00:45 UTC**
in general a class should have zero, two or more subtypes.
eg
single_is_a_child SO:0000872-trans_spliced_mRNA SO:0000479-trans_spliced_transcript
…
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Hi everyone, I am trying to use the pyscenic workflow to infer grn on my 10X scRNA dataset. I completely followed the demonstration workflow posted on SCENICprotocol cancer data sets using SKCM scRNA …
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hello,Michael
Thanks for your wonderful software.
In recent days, I want to use it for my analysis. I had installed it very well follow your instruction.
```
$REforge.py -h
usage: REforge.py [-…
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Hi! I hope all is going good!
I am trying to run gimme motif2factors (v0.17.1, installed through conda/mamba) on the genome of my organism to be able to run ANANSE. I set up a folder for a custom …
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The intricate tapestry of music composition, a complex interplay of artistic expression and technical expertise, has long been considered an exclusive domain of human creativity. However, the rise of…
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Coordinates based on transcripts depend on the exon structure at least. Coding position requires also cds start and end.
Proposal: Implement TranscriptLocation, à la HGVS, by creating a class that …
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Hi,
I am trying to use RepeatModeler-2.0.1, installed with dependencies:
```
RepeatModeler Version 2.0.1
===========================
Search Engine = rmblast 2.10.0+
Dependencies: TRF 4.10, REC…
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Most sources of this type of annotation use terms from the Sequence Ontology as descriptors - e.g. splicing variant, missense variant, nonsense variant, frameshift variant, stop gained. The terms we…
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The potent Pfizer compound hints at the low potency from introducing a benzylic hydoxyl group on the LHS. Taking a look at the full series four library there are 11 compounds which have an oxygen atom…
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Determine how to tackle the following tasks. It might be helpful to involve SMEs in this early phase to vet the improvisation segments that we're considering. The SMEs will be involved in assessing …