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Let `G` be the "extended genotype matrix", whose rows are indexed by mutations (not sites) and samples, with `G[i,j] = 1` if the sample has inherited that mutation and `0` otherwise. This is something…
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Hello, I'm trying to run plink-qc.nf on my Linux HPC cluster with:
nextflow run -c my_nf.config /Users/mchiment/.nextflow/assets/h3abionet/h3agwas/plink-qc.nf -profile sgeSingularity --samplesheet…
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**Transferred from:** [NIF-11673](https://support.crbs.ucsd.edu/browse/NIF-11673)
**Original Reporter:** Nicole Washington
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We need to expand the genetic heritability subclasses to include:
X- Y…
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Hi Michael,
Would like to ask that currently, is there anyway to get the standard output printed on airflow scheduler? Currently, I am able to get the log files via the Airflow REST API endpoint "/…
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if you use the singles app, the characters just pile on each other, or if you peep in on someone, one of the characters sits in the character screens.
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There are a number of existing slots/mixins/classes relating to - broadly speaking - phenotypic frequency. Recent discussions suggest room for improvement in their definition, structure and relationsh…
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Something like
```
def individual_heterozygosity(ts, ind):
ts.pairwise_diversity(ind.nodes)
```
should do it - very simple, but we want to make it easy and natural for people to deal with indi…
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Hello, I am trying to perform gene-based testing on UKB data (following the tutorial found here: https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/using-regenie-to-generate-variant-masks), but…
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- [ ] TopMed
- [ ] MODs
- [ ] GTex
Please write up draft descriptions of ways that others misinterpret or mis-parse your data; please do so in a way that empowers the commons team to avoid such i…
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When we download a file from a plot, e.g.
[https://dgrpool.epfl.ch/phenotypes/1643](https://dgrpool.epfl.ch/phenotypes/1643)
Then clicking on the Data button within the plot cards
The format of …