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Attempting to run simulation, with manual step-by-step on "vax-i70-t3-patched-erik.soc", get core dump on 2nd step:
Amount Amount::operator*=(Amount): Assertion `lower >= 0 && lower = 0 && upper
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Dear all,
I already know my data clustering affected by my batches and I read thatI can skip the clustering part in the training but I am not sure how this is achieved! should I just skip the FlowSOM…
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Hello Sophie!
Thank you for a great package!
I have a question regarding the optimization of flowSOM clustering.
I set a seed, used an 11x12 grid, and varied the nClus parameter to test a dif…
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There are certain applications that needs to do one inference at time, for example in analyzing large data:
https://indico.bnl.gov/event/15089/contributions/68235/attachments/43511/73312/Moneta-ROOT-…
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Hello,
Thank you for developing so nice software.
It goes well with the demo data of "68983.fcs", but gets wrong with my data.
Thank you in advance for your great help!
Best,
Yue
…
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Hi Silas,
I have a question regarding the output written to the 'results' folder:
(1) KO.tsv
Structure is:
MAG K00001 K0002 etc..
MAG1 1 1
and the file written to the G…
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Hello,
I am setting up the local database using create_local_taxonomy_db.py.
It created a database of around 5 Gb (5,541,363,712), but I also received an error (below), so not sure if it worked...…
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Please add a news card
Yezhou Wang is visiting Sofie Valk's lab in Leipzig for a three-month mitacs research stay to work on 'Capturing patterns of cortical hierarchy and dual stream architecture …
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+1 Jessica Shepard
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Hello,
I've run CytoNorm on 4 files that were generated in 4 different batches. Many markers look amazing afterwards and the batch effect between samples is gone after running CytoNorm. But some mar…