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Is there a document or good summary of the different types / conventions for VCF? For example, VCF, sites-only VCF, gVCF, pVCF, spVCF. EG:
- A gVCF (Genomic VCF) contains information for every posi…
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# Prerequisites
Please answer the following questions for yourself before submitting an issue.
## 1. The entire URL of the file you are using
https://drive.google.com/file/d/1E4L_iGZUHyNv_4XS…
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Hello,
Thank you for developing such a useful tool! I'm working on integrating scRNAseq data cross species, and with the samap tools, I got an integration result that looks pretty good. To interpr…
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The idea is to take the sparse data of annotation tracks and snip it out of the rest of the sequence. That way, no non-annotated sequence is taking up screen space (similar to photo gallery). The si…
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I was plotting the paga path, I got the error of TypeError: float() argument must be a string or a number, not 'csr_matrix'. I guess this might be related with the sparse format of adata.raw.X, beca…
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The current idiom is that apps like Chaise end up retrieving the entire catalog model via `GET /ermrest/catalog/N/schema` so they can use model-aware techniques which require knowledge of relationship…
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Hi,
I run in the following error during cross validation:
```
for ID in ecephys_session_table.iloc[:3]["behavior_session_id"]:
ps.process_session(ID, version=1)
ps.plot_fit(ID)
ps.…
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Hello, I have the problem shown in follow, I think I followed by the instructions of README completely. I have no idea how to fix it, could u please give me some hints? BTW, I have got a figure of key…
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**Motivation:** As models and datasets become increasingly large and complex, it is critical to evaluate the fairness of models according to multiple definitions of fairness and mitigate bias in learn…
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## What we have so far
- `varbvs` (due to @pcarbo) implements Carbonetto and Stephens 2012
- sparse regression via spike-slab prior, ~~assuming small proportion of variants affecting the phenotype~…