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atarashansky
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SAMap
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
MIT License
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'coo_matrix' object has no attribute 'A'
#150
dnjst
opened
17 hours ago
0
dendrogram calculation issue
#149
DiracZhu1998
opened
3 days ago
0
ImportError: cannot import name 'get_cmap' from 'matplotlib.cm'
#148
kelsell15
opened
1 month ago
3
Update setup.py
#147
atarashansky
closed
2 months ago
0
How to process the raw h5ad?
#146
jordan841220
opened
2 months ago
0
Bug to run the SAMap algorithm
#145
xiangyuma1995
opened
2 months ago
9
Export SAMap pairs results to Seurat
#144
silvainp
opened
2 months ago
0
Best course of action when one has multiple datasets per species
#143
matejasoretic
closed
3 months ago
1
SAMap consistently generating a bifurcated UMAP
#142
dariotommasini
closed
4 months ago
7
Clustering in stitched space
#141
dariotommasini
closed
5 months ago
22
fix: incorrect _smart_expand parameter
#140
atarashansky
closed
6 months ago
0
Gene filtering parameter
#139
dariotommasini
closed
5 months ago
3
Could alternative methods for BLAST be used?
#138
Budjavac
closed
6 months ago
2
conda install: can't import samap
#137
jowodo
opened
6 months ago
1
Tagging Version
#136
jowodo
opened
6 months ago
0
Reproducibility and seeding
#135
dariotommasini
opened
7 months ago
1
Combined umap for 1 cell lineage, retrieving latent representation
#134
nhgopee
opened
7 months ago
0
sankey and chord plot error
#133
dsb66
opened
8 months ago
10
installing issues
#132
stevenjblair
opened
8 months ago
0
Harmony integration (was closed issue #83)
#131
dsb66
closed
8 months ago
6
how sankey_plot show more than four species
#130
xmChen090
opened
8 months ago
7
Update analysis.py
#129
zEpoch
closed
6 months ago
0
sankey_plot error
#128
zEpoch
opened
8 months ago
5
error in runing map_genes.sh
#127
rdf1993
opened
8 months ago
1
Question about neigh_from_keys parameter
#126
Bassi-git
opened
9 months ago
1
"ValueError: could not convert string to float" in convert_eggnog_to_homologs()
#125
Zaffe24
opened
9 months ago
1
AttributeError after creating SAMAP object
#124
colinshew
closed
9 months ago
2
Mapping scores on edges
#123
DinithiRajapaksha
opened
9 months ago
0
Cross-species UMAP scatter plots
#122
zhongzheng1999
closed
1 month ago
1
get_mapping_scores() for cell types within same species non-zero
#121
dnjst
opened
10 months ago
1
ModuleNotFoundError: No module named 'samalg'
#120
DinithiRajapaksha
closed
11 months ago
2
Multi-species cell type network plot
#119
dnjst
opened
11 months ago
1
Gene Pair Finder Giving "ValueError: negative dimensions are not allowed"
#118
acgarretson
opened
12 months ago
1
UMAP looks like a line when neighborhood size was determined by using cell type labels
#117
Evenlyeven
opened
1 year ago
5
The gene expression levels after SAMap-integrated are all greater than 0
#116
HYJ-hh
closed
11 months ago
2
SAMap and Docker
#115
avianalter
closed
1 year ago
2
"ValueError: zero-size array to reduction operation" and other comments
#114
avianalter
closed
1 year ago
0
How to use appropriate single cell data files as input files for SAMap correctly?
#113
HYJ-hh
closed
1 year ago
1
SAMAP object instantiation fails with AttributeError
#112
carlosj-rr
opened
1 year ago
1
Installation instructions in the README are wrong
#111
pnewstein
closed
1 year ago
1
AttributeError: type object 'object' has no attribute 'dtype'
#110
yangqi1999
closed
1 year ago
5
Clarifying expression overlap plots
#109
dkeitley
closed
1 year ago
2
Numba Dispatcher Issue with sm.run()
#108
mikepassal
opened
1 year ago
14
the dtype of array is not correct
#107
wubaosheng
opened
1 year ago
0
Neighbourhood graph or embedding?
#106
YY-SONG0718
closed
1 year ago
2
Running map_genes.sh
#105
wershofe
closed
1 year ago
2
transfer_annotations - removed
#104
kullrich
closed
1 year ago
8
Converting files
#103
otoky
closed
1 year ago
2
"IndexError: boolean index did not match indexed array along dimension 0" in SAMAP call
#102
lb15
closed
1 year ago
6
Do noe know which reference should be choosen for doing blast
#101
houruiyan
closed
1 year ago
7
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