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- download a data of choice from 10x genomics with `sc.datasets_visium_sge()` (you can browse them [here](https://support.10xgenomics.com/spatial-gene-expression/datasets))
- run the scanpy tutorial,…
giovp updated
3 years ago
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**Question**
Hi
I want to use NCEM for CODEX data , but I could find any tutorial or how to prepare the data for this type of analysis.
Could please direct me if there is any tutorial or n…
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Hello,
First, thanks for this great tool!
I am trying to apply it to a somewhat large single cell resolution vizgen dataset of human lung cancer (Vizgen_Human_LungCancer_Patient1) from the MERSC…
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### Description of feature
Would be nice to have a single object instead of inidividual h5ad files.
Optional batch correction for integration.
grst updated
2 months ago
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- download a data of choice from 10x genomics with `sc.datasets_visium_sge()` (you can browse them [here](https://support.10xgenomics.com/spatial-gene-expression/datasets))
- run the scanpy tutorial,…
giovp updated
3 years ago
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Hello,
My colleagues and I have been able to use Tangram to successfully map genes onto our Visium spatial dataset thanks to your incredibly helpful tutorial. However, we would like to implement de…
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I have just noticed that the squidpy notebook can't make the last plot; it should be a quick fix. The latest version of the notebook (gonna be merge in main soon) is this one: https://github.com/scver…
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Hi team,
Thanks for developing the tool. I think this tool will be super helpful to the community! However, I find that there is no a complete tutorial that can guide me from the raw MERFISH data to …
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Should we have COMPLEX: in the gene symbol columns as well as the Uniprot columns?
For using squidpy and chinpy, it expects this, so I wrote this code to update the list:
```
intercell_vienna =…
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related to #64 and https://github.com/kevinyamauchi/ome-ngff-tables-prototype , as discussed this morning with @kevinyamauchi this is a description of adata slots and how they are used in https://gith…
giovp updated
2 years ago