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theislab
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ncem
Learning cell communication from spatial graphs of cells
https://ncem.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
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Interpreting Results from NCEM: Obtaining Ligand-Receptor Pairs
#164
hahia
opened
1 month ago
0
1877 del celldata.uns["spatial"] - error
#163
spatts14
opened
5 months ago
0
Update required: extend_formula_ncem
#162
merelkuijs
opened
5 months ago
0
Resolves deprecation error
#161
merelkuijs
opened
7 months ago
0
Question about r2 values
#160
showvikbiswas
opened
9 months ago
0
Trouble installing on python 3.10
#159
ivirshup
opened
11 months ago
6
Linear ncem fixes
#158
AnnaChristina
opened
1 year ago
0
[DEPENDABOT]: Update sphinx-gallery requirement from <0.11,>=0.8.2 to >=0.8.2,<0.14 in /docs
#157
dependabot[bot]
opened
1 year ago
1
[DEPENDABOT]: Update nbsphinx requirement from <0.8.7,>=0.8.1 to >=0.8.1,<0.9.3 in /docs
#156
dependabot[bot]
opened
1 year ago
1
[DEPENDABOT]: Update sphinx requirement from <=4.0.0,>=3.5.4 to >=3.5.4,<=7.0.1 in /docs
#155
dependabot[bot]
opened
1 year ago
1
update docs and python versions
#154
AnnaChristina
closed
1 year ago
1
Development
#153
AnnaChristina
closed
1 year ago
1
Almost zero documentation for the training modules API
#152
arunchakra
opened
1 year ago
3
cannot get the grid search results
#151
cam1flag
closed
9 months ago
1
[DEPENDABOT]: Bump actions/checkout from 2 to 3
#150
dependabot[bot]
opened
1 year ago
1
Work with 10X Visium Estimator
#149
junyho486
opened
1 year ago
0
LinAlgError: SVD did not converge
#148
Chuang1118
opened
1 year ago
2
Naive Question
#147
Chuang1118
opened
1 year ago
0
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.3.1
#146
dependabot[bot]
opened
1 year ago
1
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.3.0
#145
dependabot[bot]
closed
1 year ago
2
QuestionInternalError: Graph execution error:
#144
Lixinyoung
opened
1 year ago
1
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.2.6
#143
dependabot[bot]
closed
1 year ago
2
Input to the "interaction linear model"
#142
qsl734
closed
1 year ago
2
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.2.5
#141
dependabot[bot]
closed
1 year ago
2
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.2.4
#140
dependabot[bot]
closed
1 year ago
2
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.2.3
#139
dependabot[bot]
closed
1 year ago
2
[DEPENDABOT]: Bump actions/upload-artifact from 2.2.4 to 3.1.2
#138
dependabot[bot]
opened
1 year ago
1
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.2.2
#137
dependabot[bot]
closed
1 year ago
2
[DEPENDABOT]: Bump pre-commit from 2.12.0 to 2.21.0
#136
dependabot[bot]
opened
1 year ago
1
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.2.1
#135
dependabot[bot]
closed
1 year ago
2
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.2.0
#134
dependabot[bot]
closed
1 year ago
2
[DEPENDABOT]: Bump pre-commit-hooks from 3.4.0 to 4.4.0
#133
dependabot[bot]
closed
1 year ago
1
Supporting jinja2>=3.0.3
#132
GaoGN
closed
1 year ago
1
How to run NCEM for CODEX csv/or FCS output data?
#131
DRSEI
opened
1 year ago
2
Issue installing ncem on macOS
#130
DRSEI
opened
1 year ago
0
[DEPENDABOT]: Bump actions/upload-artifact from 2.2.4 to 3.1.1
#129
dependabot[bot]
closed
1 year ago
2
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.0.11
#128
dependabot[bot]
closed
1 year ago
2
[DEPENDABOT]: Bump actions/setup-python from 2.1.4 to 4.3.0
#127
dependabot[bot]
closed
1 year ago
1
compatibility with 10x visium
#126
wangjiawen2013
opened
1 year ago
4
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.0.10
#125
dependabot[bot]
closed
1 year ago
2
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.0.9
#124
dependabot[bot]
closed
1 year ago
2
added tools skeleton
#123
davidsebfischer
closed
1 year ago
0
Use Tangram mapped visium for ncem
#122
jkbenotmane
closed
1 year ago
10
[DEPENDABOT]: Bump actions/setup-python from 2.1.4 to 4.2.0
#121
dependabot[bot]
closed
1 year ago
2
ncem - python 3.9
#120
AnnaChristina
closed
1 year ago
1
Where can I find the cell_metadata.csv file for MERFISH brain data in merfish_brain.ipynb?
#119
JINJINT
closed
2 years ago
1
[DEPENDABOT]: Bump pep8-naming from 0.11.1 to 0.13.2
#118
dependabot[bot]
closed
1 year ago
1
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.0.8
#117
dependabot[bot]
closed
1 year ago
2
[DEPENDABOT]: Bump actions/cache from 2.1.6 to 3.0.7
#116
dependabot[bot]
closed
2 years ago
2
Development
#115
AnnaChristina
closed
2 years ago
1
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