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Dear experts,
I'm encountering an error when using Nibetaseries. Is the error indicating that my event file does not match my nifti data?
Also, I have a side question. The tutorial use…
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## Research question(s)
How do brain volume (i.e., cortical grey matter volume, white matter tract volume, subcortical volume) interact with neural measures of cell density (i.e. RSI) to explai…
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We need several improvements to be done to the carpet plots:
- Improve the readability (and perhaps a colorblind-safe color scale) of the indication of segments (WM, cortical GM, CSF, etc.), by mak…
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This issue seems to have been reported before (eg #10) but as it is closed I decided to open a new one.
I'm trying to run the following PALM analysis with GNU Octave on HCP subjects:
```
palm -i …
tobac updated
5 months ago
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I'm curious what would be considered an "idealized" reproducible processing stream, and what is a "good enough" reproducible processing stream, and identify the tools/skills needed to complete a "good…
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Hi Dr. Mowinckel,
I've tried to convert the 3D ICBM atlas to 2D using the code below. I've run into a few errors I'm not sure how to debug (but am hoping you have a better idea of what they mean).
…
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I would like to use AutoSeg to segment brain into 8 regions. I find it difficult to use AutoSeg for this task. I have some questions:
1. What is "Common coordinate image" in my case?
2. What is "Tis…
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## Research question(s)
Are structural brain markers of psychopathology risk, defined by parental history of a particular disorder, specific to the disorder of history or generalized across mul…
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**Is your feature request related to a problem? Please describe.**
My team is working on a tractography problem where the default 5TT mask as output by `5ttgen fsl` is inadequate. The problem occurs…
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Hello,
in the 08-calculate_gen_pvals.ipynb notebook there is a step to *Load the transcriptomic expression of each brain gene, the geodesic distance matrix of each region from Desikan-Killiany atla…