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Hello,
I have another question concerning this pipeline.
The m6A accessibility and level are calculated using in vitro samples : do you think it is possible to estimate the m6A accessibility in a…
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Add option to cluster redundant sequences in the assembled proteome using [CD-HIT](https://sites.google.com/view/cd-hit). E.g., `cd-hit -c 1.00` clusters 100% identical sequences, which are likely ass…
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Hello, Jessieren!
I`m trying to run VirFinder 1.1 in Ubuntu to discover viruses in transcriptomes. Methodology of the package is able to detect this? The following error occurs when I tried to do t…
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Dear Professor,
I am currently planning to analyze transcriptome data from The Cancer Genome Atlas (TCGA) project using this R package for my analysis. Given the various data transformation options…
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### Publication and Data Information
There are a number of avocado transcriptomes:
- https://www.sciencedirect.com/science/article/pii/S0304423818307064 - Accession: PRJNA258225
PRJNA258225 https…
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### Publication and Data Information
Transcriptome analysis of 4 cultivars, all in a database so probably able to be downloaded:
https://www.biorxiv.org/content/10.1101/301358v1
### Additional…
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The genome paper was accompanied by a re-analysis of 240 RNASeq samples for the purpose of associative transcriptomics, looking at ash dieback response. this will take a bit of work to sort out RNASeq…
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Hi,
I am comparing clustering results from CD-HIT and RapClust. One of the characteristics of CD-HIT is that it selects one representative transcript per cluster, while rapclust doesn't. Would it be …
mpaya updated
6 years ago
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The Megakaryocyte_rep2 data is much smaller than the other samples. Is this intended? In https://www.ncbi.nlm.nih.gov/sra/?term=SRR549358 the original data of the two samples is about the same size. I…
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Hi,
I am following the getting started tutorial (http://pachterlab.github.io/kallisto/10xstarting.html) for single cell RNAseq but when I get to the point:
Download the “human-mouse” transcripto…