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A new study in the Image Data Resource looking at Cytotoxic T lymphocytes (CTL) in tumors has the following phenotypes that we might want to add new CMPO terms for.
1. increased CTL confinement…
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Greetings and thanks for this amazing package!
I have been running SCEVAN v1.0.1 on a number of snRNA samples, and after proceeding through the first 7 without issue I received this error message on …
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Hi
I am new to infercnv.
While attempting to run the analysis with analysis_mode = "subcluster", I am encountering the following during Step 15:
STEP 15: computing tumor subclusters via leiden
…
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Hi,
Thanks for your software. I want to use CONICSmat to classify tumor and nontumor cells in a 10X dataset. AND I come across two probelms.
1. Compared to tumor cell markers, I'm surprised …
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Hi all,
I had another question! Is it worth subsampling single cell objects when you have uneven cell numbers in conditions?
Basically our experiment has 5 conditions:
primary tumor(pt) -- 18…
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![Annotation 2019-08-19 173250](https://user-images.githubusercontent.com/19757243/63263917-75037a80-c2a7-11e9-9f44-9b968f2baf3f.png)
![Annotation 2019-08-19 173318](https://user-images.githubusercon…
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Hello,
I am currently trying to use kassandra locally and have followed your tutorial (Python notebook) to train the full model, using "all_models_expr.tsv" (this is actually a csv file, by the way…
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### Summary
The amount of T-cells within a sample is variable. T-cells commonly comprise ~15% of total cells in blood samples, but can range anywhere from 0-15% of total cells in tumor samples. Using…
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### Project short name:
CD8ActivationCOPDVillasenor
### Primary Wrangler:
Arsenios
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/…
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Hi Thierry,
I’m a university student at UBC, Vancouver working on the dry lab of UBC’s undegraduate [iGEM](https://igem.org/Main_Page) team. Our project this year aims to use tumor-colonising salmone…