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KP.4.2+A19155G, T21653C,C11020T, C19524T, C23277T(S:S31P, T572I)
GISAID query: C11020T, C19524T, C23277T,A19155G
No. of seqs: 6( USA 3(2 from Japan) Belgium 1 Singapore 2)
First: EPI_ISL_192283…
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As discussed in (https://github.com/cov-lineages/pango-designation/issues/1940), I suggest "whole tree" mode for those who wish to browse through the whole usher tree (and see its various data arrange…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1867
KP.3.1.1+A25121C(S:N1187H)
GISAID query: A25121C, C12616T, A13121T
No. of seqs: 42(Spain 3 UK 6 France 5 Germany 5 Irelan…
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Running these tools in default UShER mode.
- pangolin v4.0.6
- pangolin-data v1.8
- constellations v0.1.9
- scorpio v0.3.17
Many sequences that should be XD (labelled clade GKA on GISAID) are g…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1946
MC.10+G22865T,G28423A(Orf9b:R47H,S:A435S)
GISAID query: G22865T, G28423A, C16332T
No. of seqs: 37(USA 14(AZ,CA,IA,MN,NJ…
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LF.8.1.1+A22994G(S:K478E)
GISAID query: A22994G,C9169T, C21654T
No. of seqs: 4(USA 3(1 from Iceland 1 from India) Japan 1(from India))
First: EPI_ISL_19241028, 2024-6-22, USA from India
Latest…
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There seems to be a new FLiRT+22N+31F branch emerging from JN.1.18.
JN.1.18+G12202T,A29333C(Orf1a:K3979N,N:N354H)+T631C,T22928C(S:F456L)+A29209G,C21627A,C21654T(S:T22N,S31F)
GISAID query:C21654T…
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There was an XDV.1-FLuQE singlet detected in Anhui in July, and now this branch has a 2nd sample in France.
XDV.1+C18788T(Orf1b:T1774I)+C3775T, G8126T, C23039G(Orf1a:A2621S, S:Q493E)
GISAID que…
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为什么我解析出来的CPU usage (刚开始的几个sample)这么大?
Sample 0: Process: Usher CPU Usage: 0.00% Res Size: 12464.00 KiB Virt Size: 400908.00 KiB Timestamp: 2014/05/13 22:15:47:667
Sample 1: Process: Usher CPU Usage: …
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From branch 18 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1771
sub branch of #2668
KP.2.3+del21653_21655(S:S31-)+C28714T+A6184C(Orf1a:R1973S)+A29647G+C21691T,G22132T,A22995…