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Hi developers,
I was running FACETS for mouse WES. It just stopped running the snp-pileup after chromosome 9 and X. I don't know any reason why it does not go through for all chromosomes. Is th…
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Hi @Yohannfra,
I have been looking at this project and love what you have done. I am the author of the https://github.com/wnew/fencing_scoring_box.
I have been upgrading and creating a couple of…
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## Description
Take next steps for designing "events near me" prototype for editor research.
## Acceptance Criteria
- [ ] Meet with Cindy to discuss possible new components incl: 3-button toggle …
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### Description of the bug
Hello, I am a newbie to nf-core sarek and I am running it on WES data for tumor-only, using CNVkit tool. Even though the pipeline completes successfully, the CNVkit tool …
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Hello,
Thanks for developing the tool. I was able to run without problems the 'Cluster' module for 39 samples individually (each sample separately) using the code:
`./PhylogicNDT.py Cluster -i ${i…
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I have some WES data - GRCh37 I would like to run HISAT HLA typing on. How do I specify Hg19 and not grch38 to be used?
Thanks.
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The WES demo and two WGS demos are out of date and refer to old versions of binning and clustering (and do not include phasing). They need to be completely redone with new walkthroughs on the example …
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With Wes's feedback, make histograms of the time deltas between exposures. If it's bimodal, maybe we have a way to throw out the bad "first frames".
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For WES implementations that support TES (e.g. [cwl-WES](https://github.com/elixir-cloud-aai/cwl-WES)), there is currently not an mechanism to provide a list of acceptable TES endpoints, requiring TES…