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I get this error when starting the GUI
```
Exception in thread "JavaFX-Launcher" java.lang.RuntimeException: Error parsing the annotation map
at org.monarchinitiative.loinc2hpogui.model.AppResourc…
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Currently if a pattern is added in batch mode --batch-patterns="a b", we get a somewhat cryptic failure:
```
Exception in thread "main" java.net.MalformedURLException: no protocol: ../patterns/a.y…
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I get the following error when trying to run the CLI, I checked it yesterday and it was fine so it may be something on my system:
16:09:38,496 |-INFO in ch.qos.logback.classic.LoggerContext[default] …
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Good morning
I am getting the current error when running the example test after installing exomiser-cli-13.0.0 on a mac laptop:
I run:
java -Xms4g -Xmx8g -jar exomiser-cli-13.0.0.jar --analysis…
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Only on macintosh, I get an except when trying to call the HpoTextMining widget in ``FenominalMainControl`` line 172,
```
HpoTextMining hpoTextMining = HpoTextMining.builder()
…
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```
wget https://data.monarchinitiative.org/exomiser/latest/2109_hg19.zip
wget https://data.monarchinitiative.org/exomiser/latest/2109_hg38.zip
wget https://data.monarchinitiative.org/exomiser/late…
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Hello!
First of all: super cool and interesting initiative, really nice!
Now the question: I would like to download the RDF files of the human gene-gene interaction Knowledge Graph, but I cannot…
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Advice: @kshefchek
aka "monarch lite transform"
will assign @deepakunni3 @yy20716
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- [x] reassign attributes
- [x] document these assignments in constants class
- [ ] adopt ontology for organism
- [x] adopt ontology for disease
- [ ] define healthy attribute as property based o…
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Dear Authors,
I am working on the datasets in http://obofoundry.org, and I wanted to know this - are the concepts mentioned in the .obo datasets linked to any larger medical terminology databa…