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I just found that doing read filter using FilterReads.py may introduce bias that is not easily noticed. This may has been reported previously but I feel it may be useful to put a warning on README suc…
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I downloaded "bowtie2-2.3.2-legacy-linux-x86_64.zip" and use the pre-compiled bowtie2 for alignment, but encounter the following message:
```
Warning: gzbuffer added in zlib v1.2.3.5. Unable to chan…
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This is a case where the SwaggerParser from 1.0.36 works fine but the conversion to the OpenAPI with 2.0.1 fails. Clearly the dates are in an unexpected format but I expect specs that parse in Swagger…
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I updated `bsseq` (and `DelayedMatrix`) and `collapseBSseq`, which was working as expected prior to this, crashes now, giving me a connection error (*Error in serialize(data, node$con) / failed to sto…
CathG updated
6 years ago
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Hi all, I met an problem when running bismark. I used a paired-end WGBS data from NCBI for a test, when I running the paired-end separately, the mapping efficiency was 15% and 65% separately, but whe…
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I do see a flash of a loading bar in 2.4 - but no authentication dialog like I get from 2.3.92
here are some tcpdump captures:
not working (2.4.5, 2.4.0)
```
08:54:58.559611 IP6 localhost.54271 …
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I use bismark bowtie2 to map and deduplicate to remove duplication. The duplication of some data is very high (nearly 60%). I want to know the reason. And how could I do?
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Just wondering if CNVnator can be used on WGBS data, like the [readDepth](https://github.com/chrisamiller/readDepth) package.
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using bowtie2 and samtools is relative in low efficiency when comparing with the two tools listed above . I open this issue for suggesting that authors may have a try to support hisat2 and sambamba i…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ataudt/methimpute
Confirm the following by editin…