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abyzovlab
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CNVnator
a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
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Install CNVnator with problem
#287
jiabowang
opened
4 months ago
1
Individual sequencing depth is different
#286
pingxinxing
opened
5 months ago
0
An error while running in a partial region
#285
vegetableyu
opened
7 months ago
4
Compile issues - version dependencies?
#284
Neato-Nick
opened
8 months ago
9
GT:CN ./1:inf
#283
jingydz
opened
1 year ago
1
cnvnator genotype 'TSystem' error
#282
skittikun
opened
1 year ago
4
Is CNVnator a software that can only run in single-thread mode?
#281
jingydz
opened
1 year ago
10
Does CNVnator support hg38?
#280
jingydz
closed
1 year ago
5
*** Break *** segmentation violation
#279
ZYongQi
opened
1 year ago
6
-his step takes too long
#278
Seanduu
closed
1 year ago
5
Abnormal Average RD and results when use cnvnator
#277
Chipmunks22
opened
1 year ago
1
Can't load index file for cram file
#276
ChristinaXu2017
closed
1 year ago
3
Bin size for 20x depth of coverage
#275
zainabae
closed
1 year ago
2
How are you determining Genotype
#274
anman1227
opened
1 year ago
3
Doc not enough
#273
bkaan99
closed
1 year ago
2
the parameter for whole exon sequencing
#272
huangl07
opened
1 year ago
0
singularity image failure
#271
cmatKhan
opened
1 year ago
1
Bin size and sequence read length?
#270
devin-qiu
closed
1 year ago
1
Type of PE in the FORMAT from vcf is set as integer - should be float
#269
miyakokodama
opened
1 year ago
0
The color meaning of each line that appears when use the view option
#268
BIjoy92
opened
2 years ago
1
Visualize multiple chromsomes at once?
#267
tania-k
opened
2 years ago
1
Use of the "-genome" option?
#266
lgmgeo
closed
2 years ago
2
"Assuming male individual!" output
#265
lgmgeo
closed
2 years ago
3
Yes, the software requires .fa file for each chromosome.
#264
sunbacteria
opened
2 years ago
3
Error in <TROOT::WriteTObject>
#263
elcortegano
closed
2 years ago
4
copy
#262
Qijie0615
closed
2 years ago
0
Cutoff points for obtaining reliable CNVs
#261
lida-R
opened
2 years ago
0
Update from Dr. Brickner
#260
arpanda
closed
2 years ago
0
*** Break *** segmentation violation
#259
anubhabkhan
opened
2 years ago
1
Problem running CNVnator with draft genome by singularity
#258
Hai1983
opened
2 years ago
1
the batch_size for nanopore data
#257
mantonglaw
opened
2 years ago
0
There was a crash. This is the entire stack trace of all threads
#256
1147843025
opened
2 years ago
1
Compilation fails with samtools 1.14 and root 6.22+
#255
Stikus
opened
2 years ago
1
Exporting CNV calls as VCFs
#254
FerFrancis
closed
2 years ago
1
ERROR plotcircular.py
#253
bucongfan
closed
2 years ago
2
Can't find directory 'bin_1000'. Can't find RD histogram for 'chr1'.
#252
liuhankui
opened
2 years ago
11
Use of CNVnator in haploid organisms
#251
pabloangulo7
opened
2 years ago
1
Getting the number of support reads for each CNV
#250
dr-ashu-geno
opened
2 years ago
1
ref genome
#249
jlchen5
closed
3 years ago
0
How to download yeppp?
#248
lufuhao
opened
3 years ago
1
No chromosome/contig information parsed.
#247
lxingze
opened
3 years ago
5
Make error
#246
kuangjianyu
opened
3 years ago
3
*** Break *** segmentation violation
#245
Saeideh-Ashouri
opened
3 years ago
1
Error plotrdbaf.py
#244
LN908
opened
3 years ago
0
Can't find directory 'bin_100' in file “/PATH/sample.root”
#243
QianXiaobo
opened
3 years ago
19
error to import vcf
#242
deb0612
opened
3 years ago
1
de novo assembled genomes
#241
weihongqi
opened
3 years ago
3
Error installation
#240
assane-mbodj
opened
3 years ago
1
cnvnator2vcf.pl error
#239
kghimire09
opened
3 years ago
13
calls not being generated
#238
kghimire09
opened
3 years ago
3
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