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I am having trouble reading in 4 fragments.tsv.gz files generated with cellranger-arc count. In my Jupyter notebook, I do the following:
```
# paths to fragment files
fragment_files = [
'/ho…
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Hello Everybody,
I perform single cell sequencing using droplet microfluidics and barcode cells using barcoded hydrogel beads generated by split and pool technique.
The structure of my library is:
…
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hi,
A bug occurred when I was using scanpy for high variant gene arithmetic. I learned that the bug originated from scikit-misc, so I came to you for help.
>my code:
`adata.layers["counts"] = a…
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hi,
Please excuse me in advance if there is a basic mis-usage in the attached code/setting.
In this [drive](https://drive.google.com/drive/folders/1S9yCVMDaCdIZWuQwG7fIjYxox-ynFkzp?usp=sharing) …
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**Describe the bug**
When running either command `adata.X = cpx.scipy.sparse.csr_matrix(adata.X)` or `rsc.get.anndata_to_GPU(adata)`, I get the following error:
```
------------------------------…
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Hi and thanks for developing this very useful tool!
when i tried to use snapatac2.tl.add_cor_scores(network, peak_mat= data) it gives me error of "'NoneType' object has no attribute 'obs_names'"
da…
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Hi there,
Great work on this package!! I'm wondering if I'm missing something but I can't find any function for loading layers from an h5ad? If I'm not mistaken, it would be great to have support for…
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in cas-tools 1.0.8 when merged the [siletti neuronal data](https://github.com/brain-bican/human-brain-cell-atlas_v1_neurons) ([anndata file](https://cellxgene.cziscience.com/collections/283d65eb-dd53-…
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Dear @andreariba,
Thank you so much for developing the DeepCycle package. It's really good. I ran the code on the example file- velocity_anndata_human_fibroblast_DeepCycle_ISMARA.h5ad and it worke…
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Hi Yuanhua,
Thanks for developing this amazing tool! I'm interested in detecting AS events in my paired-end smart-seq2 dataset and when I was running the brie-count function:
brie-count -S cell_ta…