-
Hi,
It looks like the fnWAG and fnLG models returns symmetric matrices. However, the Q matrix for the WAG isn't symmetric. Am I missing some kind of function that combines the WAG S-matrix with f…
-
I can install emojify and run fine through brew on OSX 10.9.5. But though pip installation of pyemojify seems to work, pyemojify can't be imported to python2.7 (system current), 2.6, etc..
Installe…
-
I would like to request the addition of two new fields for literature:
- peer_review
- open_access
The values for these should be derived from tags in Mendeley using the same name followed by a…
-
This week should demonstrate how to manage and handle sequence data. This should include sequence analysis that is not phylogenetics. An idea for a project might be that the students build a local BLA…
rvosa updated
7 years ago
-
__The goal of this task is to combine what I have learned from the previous genome assembly assignments to create a single script that assembles, evaluates, and annotates three different genome assemb…
-
The literature search should be enhanced in 3 ways:
### 1. Bug in country of coverage
The country of coverage is being populated incorrectly. The Mendeley response contains _many_ country things …
-
With the addition of the PhyloTrees.jl and PhyloNetworks.jl packages to the julia ecosystem (#230), it is clear that the types ad methods provided by Phylo need yet another re-work.
Whilst the curren…
-
Part 0: Chi-square = 1132.311982, (dof=1558) P = 1.000000
Composition homogeneity test using simulations.
P-values are shown.
Part Num 0
…
cymon updated
7 years ago
-
You and @Lumphie will need a phylogenetics library.
When googling for `C++ phylogenetics library` I found [this forum post](https://www.biostars.org/p/1515/), which shows there are a lot of options. …
-
Carefully go through our definitions to make them consistent with e.g. the terminology in the book "Phylogenetics" (Semple and Steel), which is regarded by many as the reference book for the area. I g…