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It would be nice if there was a way to convert VCFs annotated by VEP to tab format. It could be just adding the option `-tab` to `filter_vep` (and the user could just run it without filters if just …
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Walk/W-lines are used to keep sequence walks through the graph. There are a few options:
1. Don't add W-lines as we already have Path/P-lines in GFA1. However, there are multiple problems with P-li…
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VR needs to have a path for representing translocations.
Allele is currently defined as a contiguous sequence change at a single location. Translocations and junctions are unlikely to fit in that m…
reece updated
7 months ago
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**Describe the bug**
When run multiple times on the same data set, dEploid oscillates between two different answers. For example,
first answer:
```
Effective_K: 1.00005
I…
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_From [alanruttenberg@gmail.com](https://code.google.com/u/alanruttenberg@gmail.com/) on October 21, 2009 15:05:09_
Move children to symbol and remove
_Original issue: http://code.google.com/p/infor…
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We want to represent sets of entities (e.g. gene sets) in the Biolink Model.
This is motivated by https://github.com/NCATS-Tangerine/NCATS-ReasonerStdAPI/issues/57.
This may be related to #348.
…
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Could I please ask if you might be willing to discuss a few questions?
1. Do you have any advice for users regarding which reference genome sequence we should use?
2. Should we exclude the non-chr…
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Hi,
I'm was running Kourami on a dozens of samples and for a few of them, I get this java error:
```
Bubble Processing and Path Assembly for: A
Bubble Processing and Path Assembly for…
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Calling @akiezun @lbergelson @vadimzalunin @nh13 @yfarjoun @droazen (and anyone else who's interested)!
I'd like to start some discussion to see if there would be appetite in collaborating on a newer…
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Title: Hydroxychloroquine in patients with COVID-19: an open-label, randomized, controlled trial
## Please paste a link to the paper or a citation here:
Link: https://doi.org/10.1101/2020.04…