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sample:
https://www.ncbi.nlm.nih.gov/sra/SRR8315735
kallisto result:
![image](https://user-images.githubusercontent.com/3069871/219325395-4fc16c91-4d2d-423f-90dc-f6f3ce4aef62.png)
cellranger r…
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Hi,
The file in the Dropbox URL (https://www.dropbox.com/scl/fi/scs2qchvzuzvwndxphpgn/pancreas_multiome_2022_processed_atac.h5ad?rlkey=sd7fdtj898as0a46tsoyr476i&dl=0) shows that it has been deleted.
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Thanks again for a great package.
I'm new to scTCRseq analyses. I can see and download all the files needed to run the mvTCR tutorials, which have run smoothly
How can I apply the same methods to …
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`homosapiens_None_2021_None_renxianwen_001_10.1016/j.cell.2021.01.053` cannot be downloaded with sfaira because the download link is a google drive link which does not support programmatic download.
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**Is your dataset not yet in sfaira?**
No
**Describe the data set**
Fill in below:
- Link to publication: https://www.frontiersin.org/articles/10.3389/fendo.2021.679582/full
- Title of public…
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Thanks for the great tool. Unfortunately I am getting a segmentation error when converting a large dataset. A smaller subset works without issue. Here is the error from the large dataset:
```ℹ Conv…
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Thanks you for dev of this package!
We're using this package for loading the open problems h5ad file in a tutorial from the [best practices book](https://github.com/theislab/single-cell-best-practi…
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Hello,
I have been working with scGPT for the last week and I am studying currently the GRN part. By running the Tutorial_GRN notebook, and downloading the data/model in the links provided, I am un…
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Hi,
Thank you for the nice tool and resource! I downloaded the lung and the human immune data from the figshare website, but found there were no raw counts data in the adata object. For example, fr…
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Dear DIALOGUE team,
i want to run make.cell.type with tpm being a sparse matrix (dgRMatrix or dgCMatrix). When running with the loaded make.cell.type method I get the following error (when making t…