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Hi,
I'm working with Biodiversity Atlas Sweden, and just started experimenting with ala-name-matching (3.4-distribution). I'd like to merge the current GBIF taxonomy backbone (downloaded as DwCA from…
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**Issue by [GoogleCodeExporter](https://github.com/GoogleCodeExporter)**
_Thursday Jun 11, 2015 at 23:48 GMT_
_Originally opened as https://github.com/rlwalls2008/pco/issues/14_
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```
Please prov…
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I have been trying to get the program up and running over the last couple of days. I am using a HPC that uses SLURM and a linux-style interface. I have used the instructions on the Install-and-Run.md …
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[Here's](https://github.com/bioconda/bioconda-recipes/blob/master/recipes/sepp/meta.yaml#L24) the relevant pin. This will need to be addressed for q2-fragment-insertion to stay in the amplicon distrib…
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My own analysis of Illumina (`SRR11140750`, bottom track) and nanopore (`SRR11140751`, top track) data from the same swab sample shows your variant analysis doesn't include indels:
![image](https:/…
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Hello Benjamin,
I've merged sequence tables of several `dada()` runs (in summary around 680 samples) and I am running the `collapseNoMismatch()` right now and it takes quite a while (it's running f…
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I ran into this when running `qiime boots core-metrics` with a handful of different parameter settings. Two work-arounds are:
1) Specify the name of the recycle pool for each individual command, en…
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**Improvement Description**
`split_libraries_fastq.py` provided a `--rev_comp` flag, that would let you reverse complement the sequences before they were written out.
After talking with @wasade, w…
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Hi,
Thanks for the releasing a good package. I have the following issues;
1. I have an already demultiplexed data, with more than 40 markers (SSR and SNPs). From the example used in the AmpSeqR pape…
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Hello,
We're currently testing nanopore runs from our GridION. However, the live basecalling software guppy does not seem to support demultiplexing at the moment. As such I wanted to give Porechop …