rrwick Porechop issues - Githubissues

rrwick / Porechop

adapter trimmer for Oxford Nanopore reads

GNU General Public License v3.0

322 stars 123 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Adapters from file

#102 rebeccaMozand closed 1 month ago
1
Custom adapters cannot be found when binning but can be found using trimming function

#101 v1tazhan9 opened 4 months ago
1
Fails to zip TEMP_*

#100 Lukas-Vasionis opened 4 months ago
0
Implement more modularity to load adapters from json, instead of changing the .py file

#99 tamascogustavo closed 5 months ago
0
porechop installation error

#98 saassli21 opened 5 months ago
0
Number of reads increased after Porechop

#97 sumitra20 opened 8 months ago
1
Demultiplexing - barcode bins

#96 mzakram219 opened 8 months ago
3
Hi! Can you recommend a video to learn how to use porechop?

#95 paulinconir opened 1 year ago
1
Custom barcodes not found

#94 termithorbor opened 1 year ago
1
to discard or not to discard?.. reads with middle adapter

#93 laurabio opened 1 year ago
0
installtion Error

#92 GUNAJIV closed 1 year ago
0
installtion error

#91 GUNAJIV closed 1 year ago
0
Porechop Installation error

#90 uyenhoang1511 closed 2 years ago
0
output isn't compressed

#89 zhaoxvwahaha opened 4 years ago
0
cpp_function error (again)

#88 miguensblanco opened 4 years ago
2
I would like to add custom barcodes, but retain native (Ligation kit) adapters

#87 l-yampolsky opened 4 years ago
2
citation

#86 BioRB opened 4 years ago
2
OSError: [Errno 5] Input/output error

#85 lappazos opened 4 years ago
0
Update adapters.py

#84 ColinAnthony opened 5 years ago
1
Fix to issue #82 refering to failed barcode determination error

#83 MarkusHaak opened 5 years ago
0
Error: Porechop could not determine barcode orientation

#82 JingXia730 closed 4 years ago
2
Minimal length for custom barcodes

#81 ms-gx opened 5 years ago
0
Porechop demultiplexing error

#80 MChiaraC closed 5 years ago
1
hie. is there anyone with the fasta sequences of the rapid barcode (RB) From RB01 to RB10. please help

#79 tapiwanyakauru opened 5 years ago
1
my porechop is failing to install and to run. i am using ubuntu 18. and i have tried to run porechop but im failing to win. i am not a coding person but i have followed every instruction but when i am about to put demultiplexing codes it then says porechop command not found. pliz help me

#78 tapiwanyakauru closed 5 years ago
1
Porechop loads entire fastq into memory; may not be ideal for Promethion

#77 oneillkza opened 5 years ago
0
Fails to build with GCC 7

#76 sjackman opened 5 years ago
2
None barcode

#75 t-neumann opened 5 years ago
12
error: [Errno 2] No such file or directory: 'porechop/cpp_functions.so'

#74 EPKok opened 5 years ago
5
None barcode

#73 BOM86 opened 5 years ago
0
Add option to store discovered adapters and use them in subsequent runs.

#72 kpalin opened 5 years ago
0
Reads count decrease after porechop!

#71 jnarayan81 opened 5 years ago
1
demultiplex without trimming

#70 baracus37 opened 5 years ago
0
Killed trimming process

#69 Jaoquien opened 5 years ago
4
Added option to append barcode call to the end of each read header in output

#68 rambaut closed 4 years ago
0
none barcode

#67 DelphIONe opened 6 years ago
1
Build a basic python extension using setuptools

#66 cjw85 closed 1 year ago
0
Demultiplex barcoded reads from Albacore with barcode12a

#65 devindrown opened 6 years ago
1
Adapters problem

#64 Raistrawby opened 6 years ago
10
Add barcode 12a (RB12A)

#63 devindrown opened 6 years ago
0
report adapter positions on each read

#62 hilasharim opened 6 years ago
0
Best parameters for short reads

#61 MJMichaels1 opened 6 years ago
0
Working with Custom barcodes

#60 cwachtel opened 6 years ago
1
Running Porechop on Windows

#59 cwachtel opened 6 years ago
1
Missing porechop/cpp_functions.so

#58 iosefward closed 6 years ago
2
Lambda SQK-NSK007 and crossbarcoding detection

#57 davidvilanova opened 6 years ago
7
Skipping barcode search altogether

#56 prishly opened 6 years ago
0
Installation in Singularity xenial image

#55 mbhall88 opened 6 years ago
1
error running in porechop

#54 kanchanhole opened 6 years ago
3
Running pore adaptor on 1 D^2 data

#53 kanchanhole opened 6 years ago
0