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rrwick
/
Porechop
adapter trimmer for Oxford Nanopore reads
GNU General Public License v3.0
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Porechop on windows
#52
kanchanhole
closed
6 years ago
5
Citing Porechop
#51
bluessherpa
opened
6 years ago
5
Adding functionaliy to strand reads from cDNA sequencing
#50
cooklab
opened
6 years ago
1
Demultiplexing fail / pass folders
#49
sulheim
opened
6 years ago
1
Adapter info
#48
wyzhangMPI
opened
6 years ago
0
Adds -f flag to use a custom CSV [f]ile of barcodes.
#47
sclamons
opened
6 years ago
1
added --custom_adapters option to include adapters from a csv file
#46
phiweger
opened
6 years ago
0
stream reads instead of loading whole fastq into memory
#45
phiweger
opened
6 years ago
0
All reads ending up in none bin when demultiplexing
#44
jverlouw
opened
6 years ago
6
barcode identification requires randomised fastq
#43
Psy-Fer
opened
6 years ago
2
feature request: specify expected barcodes
#42
jvolkening
opened
6 years ago
2
revert to SeqAn 2.1.1 for older GCCs
#41
jvolkening
closed
6 years ago
4
direct RNA adapter sequences are available
#40
phiweger
closed
6 years ago
9
Barcode demultiplexing after albacore
#39
olgakarinsky
closed
6 years ago
1
Custom barcodes not binned correctly
#38
squainoo
closed
6 years ago
5
Effectiveness of --min_trim_size
#37
HenrivdGeest
opened
6 years ago
1
user defined adapter.py file
#36
Psy-Fer
opened
6 years ago
3
1d^2 adapter basecalls
#35
joshquick
closed
6 years ago
1
Required two barcodes set as default?
#34
timacwalker
closed
6 years ago
2
Discard unassigned reads
#33
jvolkening
closed
6 years ago
1
updated adapter sequences
#32
jvolkening
closed
6 years ago
1
definition of "end" vs "middle" adapters
#31
jvolkening
closed
6 years ago
2
After back-transcription, can porechop be used for direct RNA seq kit data?
#30
phiweger
closed
6 years ago
2
C++14 requirement
#29
jvolkening
closed
6 years ago
10
optional compression?
#28
jvolkening
closed
6 years ago
4
DRS read adapters...
#27
nickschurch
closed
6 years ago
5
Dealing with multiple adapters in read
#26
bc2zb
closed
6 years ago
1
Low barcode assignment %
#25
cmaggior
closed
6 years ago
3
missing file?
#24
gilfunk
closed
6 years ago
9
error: [Errno 2] No such file or directory: 'porechop/cpp_functions.so'
#23
stefanprost
closed
6 years ago
8
Use pigz for parallel compression
#22
asl
closed
6 years ago
1
Chopping out vector backbones
#21
zachcp
closed
6 years ago
3
Possible to restrict to a barcode set?
#20
nickloman
closed
6 years ago
4
Trim a fixed number of bases of read ends
#19
jonhultqvist
closed
7 years ago
2
Overcoming limitations on the number of reads that can be processed
#18
ishaanpbs
opened
7 years ago
2
Repository not found?
#17
foamy1881
closed
6 years ago
1
Include trimmed adapters in header line
#16
gringer
closed
1 year ago
1
Report progress while porechop is doing its thing
#15
gringer
closed
6 years ago
1
Install problem?
#14
fifthguy
closed
7 years ago
8
Auto format to select compression choice for output
#13
khyox
closed
7 years ago
2
Option to use barcode demultiplexing, but without adaptor trimming
#12
nickloman
closed
6 years ago
0
adapters file in readme has bad link
#11
conchoecia
closed
7 years ago
1
Make pip installable
#10
tseemann
opened
7 years ago
5
Rapid barcodes
#9
osilander
closed
7 years ago
9
could not find cpp_functions.so - please reinstall
#8
jordur
closed
7 years ago
8
Add PCR 96 Barcode sequence
#7
donutbrew
closed
6 years ago
5
Add Python 2.7 Compatibility
#6
scottgigante
closed
7 years ago
2
Add a custom adapter sequence option
#5
rrwick
opened
7 years ago
0
editing adapters.py
#4
miles-gene
closed
7 years ago
3
FASTQ output qual encodings are all "+"
#3
nextgenusfs
closed
6 years ago
2
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