rrwick Porechop issues - Githubissues

rrwick / Porechop

adapter trimmer for Oxford Nanopore reads

GNU General Public License v3.0

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issues

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Adapters from file

#102 rebeccaMozand closed 5 months ago
1
Custom adapters cannot be found when binning but can be found using trimming function

#101 v1tazhan9 opened 7 months ago
1
Fails to zip TEMP_*

#100 Lukas-Vasionis opened 7 months ago
0
Implement more modularity to load adapters from json, instead of changing the .py file

#99 tamascogustavo closed 8 months ago
0
porechop installation error

#98 saassli21 opened 8 months ago
0
Number of reads increased after Porechop

#97 sumitra20 opened 11 months ago
1
Demultiplexing - barcode bins

#96 mzakram219 opened 11 months ago
3
Hi! Can you recommend a video to learn how to use porechop?

#95 paulinconir opened 1 year ago
1
Custom barcodes not found

#94 termithorbor opened 1 year ago
1
to discard or not to discard?.. reads with middle adapter

#93 laurabio opened 1 year ago
0
installtion Error

#92 GUNAJIV closed 2 years ago
0
installtion error

#91 GUNAJIV closed 2 years ago
0
Porechop Installation error

#90 uyenhoang1511 closed 2 years ago
0
output isn't compressed

#89 zhaoxvwahaha opened 4 years ago
0
cpp_function error (again)

#88 miguensblanco opened 4 years ago
2
I would like to add custom barcodes, but retain native (Ligation kit) adapters

#87 l-yampolsky opened 4 years ago
2
citation

#86 BioRB opened 4 years ago
2
OSError: [Errno 5] Input/output error

#85 lappazos opened 5 years ago
0
Update adapters.py

#84 ColinAnthony opened 5 years ago
1
Fix to issue #82 refering to failed barcode determination error

#83 MarkusHaak opened 5 years ago
0
Error: Porechop could not determine barcode orientation

#82 JingXia730 closed 5 years ago
3
Minimal length for custom barcodes

#81 ms-gx opened 5 years ago
0
Porechop demultiplexing error

#80 MChiaraC closed 5 years ago
1
hie. is there anyone with the fasta sequences of the rapid barcode (RB) From RB01 to RB10. please help

#79 tapiwanyakauru opened 5 years ago
1
my porechop is failing to install and to run. i am using ubuntu 18. and i have tried to run porechop but im failing to win. i am not a coding person but i have followed every instruction but when i am about to put demultiplexing codes it then says porechop command not found. pliz help me

#78 tapiwanyakauru closed 5 years ago
1
Porechop loads entire fastq into memory; may not be ideal for Promethion

#77 oneillkza opened 5 years ago
0
Fails to build with GCC 7

#76 sjackman opened 5 years ago
2
None barcode

#75 t-neumann opened 6 years ago
12
error: [Errno 2] No such file or directory: 'porechop/cpp_functions.so'

#74 EPKok opened 6 years ago
5
None barcode

#73 BOM86 opened 6 years ago
0
Add option to store discovered adapters and use them in subsequent runs.

#72 kpalin opened 6 years ago
0
Reads count decrease after porechop!

#71 jnarayan81 opened 6 years ago
1
demultiplex without trimming

#70 baracus37 opened 6 years ago
0
Killed trimming process

#69 Jaoquien opened 6 years ago
4
Added option to append barcode call to the end of each read header in output

#68 rambaut closed 5 years ago
0
none barcode

#67 DelphIONe opened 6 years ago
1
Build a basic python extension using setuptools

#66 cjw85 closed 2 years ago
0
Demultiplex barcoded reads from Albacore with barcode12a

#65 devindrown opened 6 years ago
1
Adapters problem

#64 Raistrawby opened 6 years ago
10
Add barcode 12a (RB12A)

#63 devindrown opened 6 years ago
0
report adapter positions on each read

#62 hilasharim opened 6 years ago
0
Best parameters for short reads

#61 MJMichaels1 opened 6 years ago
0
Working with Custom barcodes

#60 cwachtel opened 6 years ago
1
Running Porechop on Windows

#59 cwachtel opened 6 years ago
1
Missing porechop/cpp_functions.so

#58 iosefward closed 6 years ago
2
Lambda SQK-NSK007 and crossbarcoding detection

#57 davidvilanova opened 6 years ago
7
Skipping barcode search altogether

#56 prishly opened 6 years ago
0
Installation in Singularity xenial image

#55 mbhall88 opened 6 years ago
1
error running in porechop

#54 kanchanhole opened 6 years ago
3
Running pore adaptor on 1 D^2 data

#53 kanchanhole opened 6 years ago
0