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I started using Genrich the past couple months, and wow I'm already loving it! The peak calls are quite good, and the ability to exclude regions, chromosomes upfront turns out to be super convenient. …
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I'm trying to run bcbio on 20 samples and it's only running one at a time as it steps through the yaml seemingly. I'm using slurm. I was wondering if someone can look at this bcbio snippet and if they…
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Hi vg team,
I am working on a reference genome (12 chromosomes) and an unphased VCF. I run vg autoindex with the reference and the vcf and it produced a gbz graph with indices. Vg path showed that …
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Hi,
I am trying to create a phylogeny using around 2700 sequences, kindly find below the run.
11:31:54 - INFO - |--Parsnp 1.7.2--|
Ref *.fasta
12:25:58 - INFO -
*****************************…
mf116 updated
12 months ago
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Hi Dr,
I wonder if your package can work on species who did not corresponsding BSgenome data package.
I want to use the proActiv on rabbit, however, there is not a rabbit BSgenome data package.…
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## When running panaroo 1.3.0 with the command line (using __bakta gff3__):
I obtain the following error:
```
panaroo -t 6 --codon-table 11 -o panaroo_error --clean-…
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Dear Gelana,
we are trying to implement DeNovoCNN into our pipeline and are facing some problems. I think I have a working setup, but during execution of the script:
> sudo docker run -v /mnt/NF…
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Dear authors
I am using Singularity to run Xenocp with a request for 30 cores and 240GB of memory. Unfortunately, for some large WGS BAM files, the execution fails due to memory issues. Below, you'l…
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What does "*" value in mate pair linkage in allele-level mapping mean? The corresponding gene-level mapping results showed blank.
These are versions of RGI and databases I used:
- RGI v5.1.1. bw…
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### Description of the bug
I am running the nfcore/rnaseq pipeline with human samples to do a next step in the recognition of bacterial reads. In this analysis I include several human samples, and tw…